| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/util/ |
| H A D | U2AttributeUtils.h | 30 class U2AttributeDbi; variable
47 …static U2IntegerAttribute findIntegerAttribute(U2AttributeDbi *adbi, const U2DataId &objectId, con…
49 …static U2RealAttribute findRealAttribute(U2AttributeDbi *adbi, const U2DataId &objectId, const QSt…
51 …static U2ByteArrayAttribute findByteArrayAttribute(U2AttributeDbi *adbi, const U2DataId &objectId,…
53 …static U2StringAttribute findStringAttribute(U2AttributeDbi *adbi, const U2DataId &objectId, const…
60 static void removeAttribute(U2AttributeDbi *adbi, const U2DataId &attrId, U2OpStatus &os);
62 …(const U2DataId &srcObjId, const U2DataId &dstObjId, U2AttributeDbi *srcAttributeDbi, U2AttributeD…
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| H A D | U2AttributeUtils.cpp | 36 void U2AttributeUtils::removeAttribute(U2AttributeDbi *adbi, const U2DataId &attrId, U2OpStatus &os… in removeAttribute()
45 static AttrType getAttribute(U2AttributeDbi *adbi, const U2DataId &attrId, U2OpStatus &os);
48 static AttrType findGenericAttribute(U2AttributeDbi *adbi, const U2DataId &objectId, const QString … in findGenericAttribute()
68 U2RealAttribute U2AttributeUtils::findRealAttribute(U2AttributeDbi *adbi, const U2DataId &objectId,… in findRealAttribute()
76 U2StringAttribute U2AttributeUtils::findStringAttribute(U2AttributeDbi *adbi, const U2DataId &objec… in findStringAttribute()
84 U2AttributeDbi *attributeDbi = connection.dbi->getAttributeDbi(); in findStringAttribute()
91 U2IntegerAttribute getAttribute<U2IntegerAttribute>(U2AttributeDbi *adbi, const U2DataId &attrId, U… in getAttribute()
96 U2RealAttribute getAttribute<U2RealAttribute>(U2AttributeDbi *adbi, const U2DataId &attrId, U2OpSta… in getAttribute()
101 U2ByteArrayAttribute getAttribute<U2ByteArrayAttribute>(U2AttributeDbi *adbi, const U2DataId &attrI… in getAttribute()
106 U2StringAttribute getAttribute<U2StringAttribute>(U2AttributeDbi *adbi, const U2DataId &attrId, U2O… in getAttribute()
[all …]
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| H A D | MultipleChromatogramAlignmentExporter.cpp | 145 U2AttributeDbi *attributeDbi = connection.dbi->getAttributeDbi(); in exportRowAdditionalInfo()
167 U2AttributeDbi *attributeDbi = connection.dbi->getAttributeDbi(); in exportAlignmentInfo()
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| H A D | MultipleSequenceAlignmentExporter.cpp | 153 U2AttributeDbi *attrDbi = con.dbi->getAttributeDbi(); in exportAlignmentInfo()
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| /dports/biology/ugene/ugene-40.1/src/plugins/dbi_bam/src/ |
| H A D | ConvertToSQLiteTask.h | 70 …void updateReferenceLengthAttribute(int length, const U2Assembly &assembly, U2AttributeDbi *attrib…
71 …renceMd5Attribute(const QByteArray &md5, const U2Assembly &assembly, U2AttributeDbi *attributeDbi);
72 …ciesAttribute(const QByteArray &species, const U2Assembly &assembly, U2AttributeDbi *attributeDbi);
73 …void updateReferenceUriAttribute(const QString &uri, const U2Assembly &assembly, U2AttributeDbi *a…
75 …t U2AssemblyReadsImportInfo &importInfo, const U2Assembly &assembly, U2AttributeDbi *attributeDbi);
76 …t U2AssemblyReadsImportInfo &importInfo, const U2Assembly &assembly, U2AttributeDbi *attributeDbi);
77 …t U2AssemblyReadsImportInfo &importInfo, const U2Assembly &assembly, U2AttributeDbi *attributeDbi);
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| H A D | ConvertToSQLiteTask.cpp | 556 U2AttributeDbi *attributeDbi = connection.dbi->getAttributeDbi(); in updateAttributes()
779 …dateReferenceLengthAttribute(int length, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateReferenceLengthAttribute()
793 …renceMd5Attribute(const QByteArray &md5, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateReferenceMd5Attribute()
809 …ciesAttribute(const QByteArray &species, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateReferenceSpeciesAttribute()
825 …eferenceUriAttribute(const QString &uri, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateReferenceUriAttribute()
841 …t U2AssemblyReadsImportInfo &importInfo, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateImportInfoMaxProwAttribute()
862 …t U2AssemblyReadsImportInfo &importInfo, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateImportInfoReadsCountAttribute()
879 …t U2AssemblyReadsImportInfo &importInfo, const U2Assembly &assembly, U2AttributeDbi *attributeDbi)… in updateImportInfoCoverageStatAttribute()
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| H A D | SamtoolsBasedDbi.h | 160 virtual U2AttributeDbi *getAttributeDbi();
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/attribute/ |
| H A D | AttributeDbiUnitTests.cpp | 44 U2AttributeDbi *AttributeTestData::attributeDbi = nullptr;
79 U2AttributeDbi *AttributeTestData::getAttributeDbi() { in getAttributeDbi()
230 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
338 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
354 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
369 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
388 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
407 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
426 U2AttributeDbi *attributeDbi = AttributeTestData::getAttributeDbi(); in Test()
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| H A D | AttributeDbiUnitTests.h | 38 static U2AttributeDbi *getAttributeDbi();
54 static U2AttributeDbi *attributeDbi;
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/format/sqlite_object_dbi/ |
| H A D | SQLiteObjectDbiUnitTests.h | 33 class U2AttributeDbi; variable
45 static U2AttributeDbi *getAttributeDbi();
55 static U2AttributeDbi *attributeDbi;
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| H A D | SQLiteObjectDbiUnitTests.cpp | 41 U2AttributeDbi *SQLiteObjectDbiTestData::attributeDbi = nullptr;
105 U2AttributeDbi *SQLiteObjectDbiTestData::getAttributeDbi() { in getAttributeDbi()
170 U2AttributeDbi *attrDbi = SQLiteObjectDbiTestData::getAttributeDbi(); in IMPLEMENT_TEST()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/gobjects/ |
| H A D | AssemblyObject.cpp | 79 …(const U2DataId &srcObjId, const U2DataId &dstObjId, U2AttributeDbi *srcAttributeDbi, U2AttributeD… in copyReadsUnrelatedAttributes()
176 U2AttributeDbi *srcAttributeDbi = srcCon.dbi->getAttributeDbi(); in dbi2dbiExtractRegion()
177 U2AttributeDbi *dstAttributeDbi = dstCon.dbi->getAttributeDbi(); in dbi2dbiExtractRegion()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/dbi/ |
| H A D | U2AttributeDbi.h | 56 class U2AttributeDbi : public U2ChildDbi {
58 U2AttributeDbi(U2Dbi *rootDbi) in U2AttributeDbi() function
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| H A D | U2Dbi.h | 41 class U2AttributeDbi; variable
306 virtual U2AttributeDbi *getAttributeDbi() = 0;
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| H A D | U2AbstractDbi.h | 103 virtual U2AttributeDbi *getAttributeDbi() { in getAttributeDbi()
307 class U2SimpleAttributeDbi : public U2AttributeDbi {
310 : U2AttributeDbi(rootDbi) { in U2SimpleAttributeDbi()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_assembly/ |
| H A D | AssemblyModel.cpp | 116 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in hasCachedCoverageStat()
132 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in getCoverageStat()
179 U2AttributeDbi *attributeDbi = canReadAttributes ? dbiHandle.dbi->getAttributeDbi() : nullptr; in getModelLength()
221 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in getReferenceMd5()
234 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in getModelHeight()
528 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in getReadsNumber()
614 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in getReferenceSpecies()
628 U2AttributeDbi *attributeDbi = dbiHandle.dbi->getAttributeDbi(); in getReferenceUri()
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| H A D | CalculateCoveragePerBaseTask.cpp | 191 U2AttributeDbi *attributeDbi = con.dbi->getAttributeDbi(); in run()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/ |
| H A D | SQLiteAttributeDbi.h | 29 class SQLiteAttributeDbi : public U2AttributeDbi, public SQLiteChildDBICommon {
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| H A D | SQLiteDbi.h | 117 virtual U2AttributeDbi *getAttributeDbi();
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
| H A D | MysqlAttributeDbi.h | 32 class U2FORMATS_EXPORT MysqlAttributeDbi : public U2AttributeDbi, public MysqlChildDbiCommon {
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| H A D | MysqlDbi.h | 86 virtual U2AttributeDbi *getAttributeDbi();
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/util/ |
| H A D | SqliteUpgraderFrom_1_13_To_1_25.cpp | 56 U2AttributeDbi *attributeDbi = dbi->getAttributeDbi(); in upgradeCoverageAttribute()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/util/upgraders/ |
| H A D | MysqlUpgraderFrom_1_24_To_1_25.cpp | 64 U2AttributeDbi *attributeDbi = dbi->getAttributeDbi(); in upgradeCoverageAttribute()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Lang/src/model/url_attribute/ |
| H A D | DbFolderScanner.cpp | 111 U2AttributeDbi *aDbi = dbConnection.dbi->getAttributeDbi(); in hasAccession()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/ace/ |
| H A D | ConvertAceToSqliteTask.cpp | 244 U2AttributeDbi *attrDbi = dbi->getAttributeDbi(); in updateAttributeDbi()
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