Searched refs:U2CigarOp_P (Results 1 – 9 of 9) sorted by relevance
68 if (U2CigarOp_I != op && U2CigarOp_S != op && U2CigarOp_P != op && U2CigarOp_H != op) { in hasNext()119 return U2CigarOp_P == op || U2CigarOp_H == op; in isPaddingOrHardClip()174 << U2CigarToken(U2CigarOp_P, 200) in t01()205 << U2CigarToken(U2CigarOp_P, 1) in t03()
45 return U2CigarOp_P; // padded in char2Cigar()75 case U2CigarOp_P: in cigar2Char()
255 removeAll(&cigarVector, U2CigarOp_P); in calculateCoverage()259 cigarVector.removeAll(U2CigarOp_P); in calculateCoverage()293 removeAll(&cigarVector, U2CigarOp_P); in addToCoverage()297 cigarVector.removeAll(U2CigarOp_P); in addToCoverage()
85 U2CigarOp_P = 6, // padded enumerator
580 removeAll(&cigarVector, U2CigarOp_P); in calculateCoverage()584 cigarVector.removeAll(U2CigarOp_P); in calculateCoverage()618 removeAll(&cigarVector, U2CigarOp_P); in addToCoverage()622 cigarVector.removeAll(U2CigarOp_P); in addToCoverage()
129 } while (U2CigarOp_I == cigarOp || U2CigarOp_S == cigarOp || U2CigarOp_P == cigarOp); in nextCigarOp()
46 case U2CigarOp_P: // padded in cigarOp2samtools()
173 case U2CigarOp_P: in parseAlignmentString()
826 cigarOp = U2CigarOp_P; in alignmentToRead()