| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/util/ |
| H A D | VariationPropertiesUtils.h | 40 SequenceQueryCache(U2SequenceDbi *seqDbi, const U2DataId &seqDataId);
41 void setSequenceDbi(U2SequenceDbi *sDbi);
55 U2SequenceDbi *seqDbi;
79 …tDamagedTriplet(const Gene &gene, int nuclPos, const U2DataId &seqID, U2SequenceDbi *seqDbi, U2OpS…
87 …static QByteArray getCodingSequence(const Gene &gene, const U2DataId &seqId, U2SequenceDbi *dbi, U…
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| H A D | McaDbiUtils.cpp | 51 U2SequenceDbi *sequenceDbi = connection.dbi->getSequenceDbi(); in updateMca()
249 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in removeCharacters()
288 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in replaceCharactersInRow()
331 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in replaceCharactersInRow()
385 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in removeRegion()
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| H A D | U2SequenceUtils.cpp | 100 U2SequenceDbi *srcSeqDbi = srcCon.dbi->getSequenceDbi(); in copySequence()
116 U2SequenceDbi *dstSeqDbi = dstCon.dbi->getSequenceDbi(); in copySequence()
148 U2SequenceDbi *sequenceDbi = con.dbi->getSequenceDbi(); in updateSequenceName()
162 U2SequenceDbi *seqDbi = con.dbi->getSequenceDbi(); in _extractRegions()
193 U2SequenceDbi *seqDbi = con.dbi->getSequenceDbi(); in extractRegions()
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| H A D | MultipleSequenceAlignmentImporter.cpp | 149 U2SequenceDbi *seqDbi = con.dbi->getSequenceDbi(); in importSequences()
182 U2SequenceDbi *seqDbi = con.dbi->getSequenceDbi(); in splitToCharsAndGaps()
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| H A D | MsaDbiUtils.cpp | 711 U2SequenceDbi *seqDbi = con.dbi->getSequenceDbi(); in updateMsa()
937 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in removeRegion()
978 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in replaceCharactersInRow()
1012 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in replaceNonGapCharacter()
1040 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in keepOnlyAlphabetChars()
1074 U2SequenceDbi *sequenceDbi = con->dbi->getSequenceDbi(); in removeEmptyRows()
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/sequence/ |
| H A D | SequenceDbiUnitTests.cpp | 42 U2SequenceDbi *SequenceTestData::sequenceDbi = nullptr;
76 U2SequenceDbi *SequenceTestData::getSequenceDbi() { in getSequenceDbi()
101 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in checkUpdateSequence()
175 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
199 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
213 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
225 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
243 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
263 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
283 U2SequenceDbi *sequenceDbi = SequenceTestData::getSequenceDbi(); in Test()
[all …]
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| H A D | SequenceDbiUnitTests.h | 49 static U2SequenceDbi *getSequenceDbi();
58 static U2SequenceDbi *sequenceDbi;
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/msa/ |
| H A D | MsaDbiUnitTests.h | 32 class U2SequenceDbi; variable
40 static U2SequenceDbi *getSequenceDbi();
46 static U2SequenceDbi *sequenceDbi;
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| H A D | MsaDbiUnitTests.cpp | 37 U2SequenceDbi *MsaTestData::sequenceDbi = nullptr;
73 U2SequenceDbi *MsaTestData::getSequenceDbi() { in getSequenceDbi()
110 U2SequenceDbi *sequenceDbi = MsaTestData::getSequenceDbi(); in IMPLEMENT_TEST()
181 U2SequenceDbi *sequenceDbi = MsaTestData::getSequenceDbi(); in IMPLEMENT_TEST()
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/dbi/features/ |
| H A D | FeatureDbiUnitTests.cpp | 40 U2SequenceDbi *FeatureTestData::sequenceDbi = nullptr;
98 U2SequenceDbi *FeatureTestData::getSequenceDbi() { in getSequenceDbi()
173 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
199 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
228 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
296 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
378 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
412 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
440 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
477 U2SequenceDbi *sequenceDbi = FeatureTestData::getSequenceDbi(); in IMPLEMENT_TEST()
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| H A D | FeatureDbiUnitTests.h | 35 class U2SequenceDbi; variable
40 static U2SequenceDbi *getSequenceDbi();
59 static U2SequenceDbi *sequenceDbi;
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/format/sqlite_object_dbi/ |
| H A D | SQLiteObjectDbiUnitTests.h | 35 class U2SequenceDbi; variable
47 static U2SequenceDbi *getSequenceDbi();
57 static U2SequenceDbi *sequenceDbi;
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/dbi/ |
| H A D | U2SequenceDbi.h | 34 class U2SequenceDbi : public U2ChildDbi {
36 U2SequenceDbi(U2Dbi *rootDbi) in U2SequenceDbi() function
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| H A D | U2Dbi.h | 50 class U2SequenceDbi; variable
282 virtual U2SequenceDbi *getSequenceDbi() = 0;
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_sequence/sequence_info/ |
| H A D | DNAStatisticsTask.h | 38 class U2SequenceDbi; variable
93 double calcPi(U2SequenceDbi *sequenceDbi);
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| H A D | CharOccurTask.cpp | 58 U2SequenceDbi *sequenceDbi = dbiConnection.dbi->getSequenceDbi(); in run()
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| H A D | DinuclOccurTask.cpp | 55 U2SequenceDbi *sequenceDbi = dbiConnection.dbi->getSequenceDbi(); in run()
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/util/ |
| H A D | MsaDbiUtilsUnitTests.h | 34 class U2SequenceDbi; variable
47 static U2SequenceDbi *getSequenceDbi();
63 static U2SequenceDbi *sequenceDbi;
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| H A D | MsaDbiUtilsUnitTests.cpp | 40 U2SequenceDbi *MsaDbiUtilsTestUtils::sequenceDbi = nullptr;
76 U2SequenceDbi *MsaDbiUtilsTestUtils::getSequenceDbi() { in getSequenceDbi()
224 U2SequenceDbi *sequenceDbi = getSequenceDbi(); in removeRegionTestAlignment()
1411 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
1466 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
1525 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
1587 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
1649 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
1712 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
1774 U2SequenceDbi *seqDbi = MsaDbiUtilsTestUtils::getSequenceDbi(); in IMPLEMENT_TEST()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/sqlite_dbi/ |
| H A D | SQLiteSequenceDbi.h | 30 class SQLiteSequenceDbi : public U2SequenceDbi, public SQLiteChildDBICommon {
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| H A D | SQLiteDbi.h | 109 virtual U2SequenceDbi *getSequenceDbi();
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/mysql_dbi/ |
| H A D | MysqlSequenceDbi.h | 34 class U2FORMATS_EXPORT MysqlSequenceDbi : public U2SequenceDbi, public MysqlChildDbiCommon {
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| H A D | MysqlDbi.h | 93 virtual U2SequenceDbi *getSequenceDbi();
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| /dports/biology/ugene/ugene-40.1/src/plugins/api_tests/src/core/format/sqlite_sequence_dbi/ |
| H A D | SequenceDbiSQLiteSpecificUnitTests.h | 32 class U2SequenceDbi; variable
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_assembly/ |
| H A D | ExportConsensusVariationsTask.cpp | 128 U2SequenceDbi *seqDbi = con.dbi->getSequenceDbi(); in reportResult()
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