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Searched refs:VRNA_FILE_FORMAT_MSA_CLUSTAL (Results 1 – 10 of 10) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/io/
H A Dfile_formats_msa.h22 #define VRNA_FILE_FORMAT_MSA_CLUSTAL 1U macro
57 VRNA_FILE_FORMAT_MSA_CLUSTAL \
H A Dfile_formats_msa.c153 { VRNA_FILE_FORMAT_MSA_CLUSTAL, parse_aln_clustal, "ClustalW format" },
/dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/
H A DRNALalifold.c102 input_format_options = VRNA_FILE_FORMAT_MSA_CLUSTAL; /* default to ClustalW format */ in main()
283 input_format_options = VRNA_FILE_FORMAT_MSA_CLUSTAL; in main()
359 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in main()
392 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in main()
527 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in main()
H A DRNAalifold.c230 opt->input_format = VRNA_FILE_FORMAT_MSA_CLUSTAL; /* default to ClustalW format */ in init_default_options()
539 opt.input_format = VRNA_FILE_FORMAT_MSA_CLUSTAL; in main()
697 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in main()
746 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in process_input()
783 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in process_input()
H A DRNAeval.c486 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in process_alignment_input()
523 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in process_alignment_input()
H A DRNAplot.c435 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in process_alignment_input()
472 case VRNA_FILE_FORMAT_MSA_CLUSTAL: in process_alignment_input()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/
H A Dfile_formats.i270 %constant unsigned int FILE_FORMAT_MSA_CLUSTAL = VRNA_FILE_FORMAT_MSA_CLUSTAL;
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/
H A DRNA_wrap.cpp85286 …unsigned_SS_int SWIG_PERL_CALL_ARGS_1(static_cast< unsigned int >(VRNA_FILE_FORMAT_MSA_CLUSTAL))); in XS()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python/
H A DRNA_wrap.cpp78871 …MSA_CLUSTAL",SWIG_From_unsigned_SS_int(static_cast< unsigned int >(VRNA_FILE_FORMAT_MSA_CLUSTAL))); in SWIG_init()
/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Python3/
H A DRNA_wrap.cpp79465 …MSA_CLUSTAL",SWIG_From_unsigned_SS_int(static_cast< unsigned int >(VRNA_FILE_FORMAT_MSA_CLUSTAL))); in SWIG_init()