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Searched refs:VolPar (Results 1 – 21 of 21) sorted by relevance

/dports/science/afni/afni-AFNI_21.3.16/src/SUMA/
H A DSUMA_VolData.c1137 …iv = SUMA_THD_3dmm_to_dicomm( SO->VolPar->xxorient, SO->VolPar->yyorient, SO->VolPar->zzorient, f… in SUMA_Delign_to_VolPar()
1652 fv.xyz[0] = SO->VolPar->xorg + iv.xyz[0] * SO->VolPar->dx ; in SUMA_THD_3dfind_to_3dmm()
1653 fv.xyz[1] = SO->VolPar->yorg + iv.xyz[1] * SO->VolPar->dy ; in SUMA_THD_3dfind_to_3dmm()
1654 fv.xyz[2] = SO->VolPar->zorg + iv.xyz[2] * SO->VolPar->dz ; in SUMA_THD_3dfind_to_3dmm()
1685 fv.xyz[0] = SO->VolPar->xorg + iv.ijk[0] * SO->VolPar->dx ; in SUMA_THD_3dind_to_3dmm()
1686 fv.xyz[1] = SO->VolPar->yorg + iv.ijk[1] * SO->VolPar->dy ; in SUMA_THD_3dind_to_3dmm()
1687 fv.xyz[2] = SO->VolPar->zorg + iv.ijk[2] * SO->VolPar->dz ; in SUMA_THD_3dind_to_3dmm()
1702 iv.xyz[0] = (fv.xyz[0] - SO->VolPar->xorg) / SO->VolPar->dx ; in SUMA_THD_3dmm_to_3dfind()
1703 iv.xyz[1] = (fv.xyz[1] - SO->VolPar->yorg) / SO->VolPar->dy ; in SUMA_THD_3dmm_to_3dfind()
1704 iv.xyz[2] = (fv.xyz[2] - SO->VolPar->zorg) / SO->VolPar->dz ; in SUMA_THD_3dmm_to_3dfind()
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H A DSUMA_niml.c1929 if (SO->VolPar) SUMA_Free_VolPar(SO->VolPar); in SUMA_process_NIML_data()
1930 SO->VolPar = SOn->VolPar; in SUMA_process_NIML_data()
2126 if (SO->VolPar) { in SUMA_makeNI_SurfIXYZ()
2237 if (SO->VolPar) { in SUMA_makeNI_SurfINORM()
2305 if (SO->VolPar) { in SUMA_makeNI_SurfIJK()
3912 if (!VolPar) { in SUMA_SOVolPar2VolPar_nel()
3918 if (!VolPar->idcode_str) { SUMA_NEW_ID(VolPar->idcode_str, NULL); } in SUMA_SOVolPar2VolPar_nel()
3968 sprintf(stmp, "%d %d %d", VolPar->nx, VolPar->ny, VolPar->nz); in SUMA_SOVolPar2VolPar_nel()
3972 VolPar->xxorient, VolPar->yyorient, VolPar->zzorient); in SUMA_SOVolPar2VolPar_nel()
3975 sprintf(stmp, "%f %f %f", VolPar->dx, VolPar->dy, VolPar->dz); in SUMA_SOVolPar2VolPar_nel()
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H A DSUMA_3dSkullStrip.c2373 for (i=0; i<SO->VolPar->nx*SO->VolPar->ny*SO->VolPar->nz; ++i) { in main()
2381 for (i=0; i<SO->VolPar->nx*SO->VolPar->ny*SO->VolPar->nz; ++i) { in main()
2384 SO->VolPar->nx*SO->VolPar->ny); in main()
2885 …rintf(SUMA_STDERR,"%s: \nPre: %d %d %d\n", FuncName, SO->VolPar->nx, SO->VolPar->ny, SO->VolPar->n… in main()
2886 SUMA_Free_VolPar(SO->VolPar); SO->VolPar = NULL; in main()
2888 …intf(SUMA_STDERR,"%s: \nPost: %d %d %d\n", FuncName, SO->VolPar->nx, SO->VolPar->ny, SO->VolPar->n… in main()
2890 SUMA_Free_VolPar(SOhull->VolPar); SOhull->VolPar = NULL; in main()
3001 SO, SO->VolPar, &N_in, in main()
3055 for (i=0; i<SO->VolPar->nx*SO->VolPar->ny*SO->VolPar->nz; ++i) { in main()
3062 for (i=0; i<SO->VolPar->nx*SO->VolPar->ny*SO->VolPar->nz; ++i) { in main()
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H A DSUMA_GeomComp.h93 SUMA_SurfaceObject *SO, SUMA_VOLPAR *VolPar, float *NodeIJKlist,
334 SUMA_VOLPAR *VolPar);
336 SUMA_VOLPAR *VolPar);
338 SUMA_VOLPAR *VolPar);
340 SUMA_VOLPAR *VolPar);
342 SUMA_VOLPAR *VolPar);
344 SUMA_VOLPAR *VolPar);
H A DSUMA_ConvertSurface.c943 tlrc_name = (char *) SUMA_calloc (strlen(SO->VolPar->dirname)+ in main()
944 strlen(SO->VolPar->prefix)+60, in main()
947 SO->VolPar->dirname, SO->VolPar->prefix); in main()
979 acpc_name = (char *) SUMA_calloc (strlen(SO->VolPar->dirname)+ in main()
980 strlen(SO->VolPar->prefix)+60, in main()
983 "%s%s+acpc.HEAD", SO->VolPar->dirname, SO->VolPar->prefix); in main()
H A DSUMA_3dSurfMask.c305 vp = SO->VolPar; in main()
377 if (vp != SO->VolPar) SUMA_Free_VolPar(vp); vp = NULL; in main()
H A DSUMA_BrainWrap.h76 SUMA_VOLPAR *VolPar, int *N_inp, int box_only) ;
78 SUMA_VOLPAR *VolPar, int *N_inp, int fillhole,
81 short *SUMA_FindVoxelsInSurface (SUMA_SurfaceObject *SO, SUMA_VOLPAR *VolPar,
H A DSUMA_niml.h43 NI_element *SUMA_SOVolPar2VolPar_nel (SUMA_SurfaceObject *SO, SUMA_VOLPAR *VolPar, SUMA_DSET_TYPE d…
H A DSUMA_Homer.c68 SOv[ipart]->VolPar = NULL; in main()
H A DSUMA_Load_Surface_Object.c958 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
988 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1018 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1049 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1123 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1180 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1213 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1246 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1360 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
1431 if (SO->VolPar == NULL) { in SUMA_Load_Surface_Object_eng()
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H A DSUMA_BrainWrap.c3201 isin = (short *)SUMA_malloc(VolPar->nx*VolPar->ny*VolPar->nz * sizeof(short)); in SUMA_FindVoxelsInSurface_SLOW()
3231 for (k=0; k < VolPar->nz; ++k) { in SUMA_FindVoxelsInSurface_SLOW()
3232 for (j=0; j < VolPar->ny; ++j) { in SUMA_FindVoxelsInSurface_SLOW()
3233 for (i=0; i < VolPar->nx; ++i) { in SUMA_FindVoxelsInSurface_SLOW()
3372 nx = VolPar->nx; ny = VolPar->ny; nz = VolPar->nz; in SUMA_SurfGridIntersect()
3601 Vox1D2Vox3D(i, VolPar->nx, VolPar->ny*VolPar->nx, IJK); in SUMA_SurfGridIntersect()
3808 SUMA_SurfaceObject *SO, SUMA_VOLPAR *VolPar, in SUMA_FindVoxelsInSurface() argument
3856 SUMA_Show_VolPar(VolPar, fdb); in SUMA_FindVoxelsInSurface()
3898 isin = SUMA_SurfGridIntersect (SO, tmpXYZ, VolPar, in SUMA_FindVoxelsInSurface()
3944 nx = SO->VolPar->nx; ny = SO->VolPar->ny; nxy = nx * ny; in SUMA_Suggest_Touchup_Grad()
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H A DSUMA_Surf2VolCoord_demo.c486 vp = SO->VolPar; in main()
588 if (vp != SO->VolPar) SUMA_Free_VolPar(vp); vp = NULL; in main()
H A DSUMA_NikoMap.c249 vp = SO->VolPar; in main()
484 if (vp != SO->VolPar) SUMA_Free_VolPar(vp); vp = NULL; in main()
H A DSUMA_SurfaceMetrics.c784 tlrc_name = (char *) SUMA_calloc (strlen(SO->VolPar->dirname)+ in main()
785 strlen(SO->VolPar->prefix)+60, in main()
787 sprintf (tlrc_name, "%s%s+tlrc.HEAD", SO->VolPar->dirname, SO->VolPar->prefix); in main()
H A DSUMA_Engine.c2410 if (SO->VolPar && SO->VolPar->filecode) { in SUMA_Engine()
2411 if (strcmp(LastPrefix, SO->VolPar->prefix)) { in SUMA_Engine()
2415 SO->VolPar->prefix); in SUMA_Engine()
2428 SO->VolPar->prefix); in SUMA_Engine()
7169 && SO->VolPar ) { in SUMA_FormSOListToSendToAFNI()
H A DSUMA_clippingPlanes.c1284 fprintf(stderr, "VolPar (1) = %p\n", SO1->VolPar); in compareSurfaces()
1285 fprintf(stderr, "VolPar (2) = %p\n", SO2->VolPar); in compareSurfaces()
H A DSUMA_GeomComp.c394 SUMA_SurfaceObject *SO, SUMA_VOLPAR *VolPar, float *NodeIJKlistU, in SUMA_GetVoxelsIntersectingTriangle() argument
427 nx = VolPar->nx; in SUMA_GetVoxelsIntersectingTriangle()
428 ny = VolPar->ny; in SUMA_GetVoxelsIntersectingTriangle()
429 nz = VolPar->nz; in SUMA_GetVoxelsIntersectingTriangle()
436 if (!SUMA_vec_dicomm_to_3dfind (NodeIJKlist, SO->N_Node, VolPar)) { in SUMA_GetVoxelsIntersectingTriangle()
465 VolPar->filecode); in SUMA_GetVoxelsIntersectingTriangle()
597 if (!inside_only || !(SUMA_IS_STRICT_NEG(VolPar->Hand * dist))) { in SUMA_GetVoxelsIntersectingTriangle()
606 signdist[N_voxels1d] = VolPar->Hand * dist; in SUMA_GetVoxelsIntersectingTriangle()
H A DSUMA_define.h3212 SUMA_VOLPAR *VolPar; /*!< Parent Volume structure */ member
H A DSUMA_CreateDO.c16305 NI_set_attribute (nel, "volume_idcode", SO->VolPar->vol_idcode_str); in SUMA_Paint_SO_ROIplanes()
16306 NI_set_attribute (nel, "volume_filecode", SO->VolPar->filecode); in SUMA_Paint_SO_ROIplanes()
16307 NI_set_attribute (nel, "volume_headname", SO->VolPar->headname); in SUMA_Paint_SO_ROIplanes()
16308 NI_set_attribute (nel, "volume_dirname", SO->VolPar->dirname); in SUMA_Paint_SO_ROIplanes()
19768 if (SO->VolPar) SUMA_Free_VolPar(SO->VolPar); in SUMA_Free_Surface_Object()
20317 SS = SUMA_StringAppend (SS, SUMA_VolPar_Info(SO->VolPar)); in SUMA_SurfaceObject_Info()
21351 SO[i].VolPar = NULL; in SUMA_Alloc_SurfObject_Struct()
H A DSUMA_SegFunc.c10134 SOi->VolPar = SUMA_VolParFromDset (iset); in SUMA_ExtractHead()
10253 SOi->VolPar = SUMA_VolParFromDset (iset); in SUMA_ExtractHead_RS()
10333 SOi->VolPar = SUMA_VolParFromDset (iset); in SUMA_Mask_Skin()
H A DSUMA_Surface_IO.c8803 if (SO->VolPar) { in SUMA_SO2nimlSO()
8804 nel = SUMA_SOVolPar2VolPar_nel (SO, SO->VolPar, SUMA_SURFACE_VOLUME_PARENT); in SUMA_SO2nimlSO()