| /dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/align/ |
| H A D | _epo.c | 1222 PyObject *__pyx_v_P; member
3257 __pyx_cur_scope->__pyx_v_P = __pyx_t_4; in __pyx_pf_2bx_5align_4_epo_rem_dash()
3793 __pyx_t_7 = __pyx_cur_scope->__pyx_v_P; in __pyx_pf_2bx_5align_4_epo_rem_dash()
3798 __Pyx_GOTREF(__pyx_cur_scope->__pyx_v_P); in __pyx_pf_2bx_5align_4_epo_rem_dash()
3833 __pyx_t_4 = __pyx_cur_scope->__pyx_v_P; in __pyx_pf_2bx_5align_4_epo_rem_dash()
3916 __pyx_t_7 = __pyx_cur_scope->__pyx_v_P; in __pyx_pf_2bx_5align_4_epo_rem_dash()
4049 __Pyx_INCREF(__pyx_cur_scope->__pyx_v_P); in __pyx_pf_2bx_5align_4_epo_rem_dash()
4050 __Pyx_GIVEREF(__pyx_cur_scope->__pyx_v_P); in __pyx_pf_2bx_5align_4_epo_rem_dash()
7389 Py_CLEAR(p->__pyx_v_P); in __pyx_tp_dealloc_2bx_5align_4_epo___pyx_scope_struct__rem_dash()
7403 if (p->__pyx_v_P) { in __pyx_tp_traverse_2bx_5align_4_epo___pyx_scope_struct__rem_dash()
[all …]
|
| /dports/math/py-yt/yt-4.0.1/yt/utilities/lib/ |
| H A D | geometry_utils.cpp | 26340 PyArrayObject *__pyx_v_P = 0; in __pyx_pw_2yt_9utilities_3lib_14geometry_utils_65solution_radius() local
26708 PyArrayObject *__pyx_v_P = 0; in __pyx_pw_2yt_9utilities_3lib_14geometry_utils_67knn_direct() local
27719 PyArrayObject *__pyx_v_P = 0; in __pyx_pw_2yt_9utilities_3lib_14geometry_utils_71csearch_morton() local
28423 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_70csearch_morton()
28595 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_70csearch_morton()
29203 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_70csearch_morton()
29557 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_70csearch_morton()
30141 PyArrayObject *__pyx_v_P = 0; in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_72knn_morton() local
30871 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_72knn_morton()
30872 __Pyx_GIVEREF(((PyObject *)__pyx_v_P)); in __pyx_pf_2yt_9utilities_3lib_14geometry_utils_72knn_morton()
[all …]
|
| H A D | primitives.c | 1880 __pyx_t_5numpy_float64_t __pyx_v_P[3]; in __pyx_f_2yt_9utilities_3lib_10primitives_ray_triangle_intersect() local
1927 …x_fuse_1__pyx_f_2yt_9utilities_3lib_8vec3_ops_cross(__pyx_v_ray->direction, __pyx_v_e2, __pyx_v_P); in __pyx_f_2yt_9utilities_3lib_10primitives_ray_triangle_intersect()
1936 __pyx_v_det = __pyx_fuse_1__pyx_f_2yt_9utilities_3lib_8vec3_ops_dot(__pyx_v_e1, __pyx_v_P); in __pyx_f_2yt_9utilities_3lib_10primitives_ray_triangle_intersect()
2000 …__pyx_v_u = (__pyx_fuse_1__pyx_f_2yt_9utilities_3lib_8vec3_ops_dot(__pyx_v_T, __pyx_v_P) * __pyx_v… in __pyx_f_2yt_9utilities_3lib_10primitives_ray_triangle_intersect()
|
| /dports/science/py-dipy/dipy-1.4.1/dipy/denoise/ |
| H A D | denspeed.c | 3609 npy_intp __pyx_v_P; in __pyx_pf_4dipy_7denoise_8denspeed_2_nlmeans_3d() local
3694 __pyx_v_P = __pyx_t_6; in __pyx_pf_4dipy_7denoise_8denspeed_2_nlmeans_3d()
4212 …__pyx_v_patch_vol_size = ((((__pyx_v_P + __pyx_v_P) + 1) * ((__pyx_v_P + __pyx_v_P) + 1)) * ((__py… in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4266 __pyx_t_1 = (__pyx_v_BS - __pyx_v_P); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4278 __pyx_t_4 = (__pyx_v_BS - __pyx_v_P); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4290 __pyx_t_7 = (__pyx_v_BS - __pyx_v_P); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4320 __pyx_t_10 = (__pyx_v_P + 1); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4332 __pyx_t_13 = (__pyx_v_P + 1); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4344 __pyx_t_16 = (__pyx_v_P + 1); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
4452 __pyx_t_1 = (__pyx_v_BS - __pyx_v_P); in __pyx_f_4dipy_7denoise_8denspeed_process_block()
[all …]
|
| /dports/science/py-GPy/GPy-1.10.0/GPy/models/ |
| H A D | state_space_cython.c | 3161 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_Ak()
3162 __Pyx_GIVEREF(((PyObject *)__pyx_v_P)); in __pyx_f_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_Ak()
3241 PyArrayObject *__pyx_v_P = 0; in __pyx_pw_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_3Ak() local
3294 __pyx_v_P = ((PyArrayObject *)values[2]); in __pyx_pw_3GPy_6models_18state_space_cython_24Dynamic_Callables_Cython_3Ak()
15078 PyArrayObject *__pyx_v_P = 0; in __pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_7Ak() local
15131 __pyx_v_P = ((PyArrayObject *)values[2]); in __pyx_pw_3GPy_6models_18state_space_cython_22AQcompute_batch_Cython_7Ak()
24233 PyArrayObject *__pyx_v_P = 0; in __pyx_pf_3GPy_6models_18state_space_cython_4_cont_discr_kalman_filter_raw_Cython() local
24595 __pyx_v_P = ((PyArrayObject *)__pyx_t_4); in __pyx_pf_3GPy_6models_18state_space_cython_4_cont_discr_kalman_filter_raw_Cython()
26120 __Pyx_INCREF(((PyObject *)__pyx_v_P)); in __pyx_pf_3GPy_6models_18state_space_cython_4_cont_discr_kalman_filter_raw_Cython()
26121 __Pyx_GIVEREF(((PyObject *)__pyx_v_P)); in __pyx_pf_3GPy_6models_18state_space_cython_4_cont_discr_kalman_filter_raw_Cython()
[all …]
|
| /dports/devel/py-qutip/qutip-4.6.2/qutip/control/ |
| H A D | cy_grape.cpp | 2467 PyObject *__pyx_v_P = NULL; in __pyx_f_5qutip_7control_8cy_grape_cy_grape_inner() local
2573 __Pyx_XDECREF_SET(__pyx_v_P, __pyx_t_5); in __pyx_f_5qutip_7control_8cy_grape_cy_grape_inner()
2630 …__pyx_t_9 = __Pyx_c_neg_double(__pyx_f_5qutip_7control_8cy_grape_cy_overlap(__pyx_v_P, __pyx_v_Q, … in __pyx_f_5qutip_7control_8cy_grape_cy_grape_inner()
2656 …7control_8cy_grape_cy_overlap(__pyx_v_P, __pyx_v_Q, 0)), __pyx_f_5qutip_7control_8cy_grape_cy_over… in __pyx_f_5qutip_7control_8cy_grape_cy_grape_inner()
3080 __Pyx_XDECREF(__pyx_v_P); in __pyx_f_5qutip_7control_8cy_grape_cy_grape_inner()
|
| /dports/math/py-openTSNE/openTSNE-0.6.1/openTSNE/ |
| H A D | kl_divergence.cpp | 2718 …divergence_exact(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_P, __Pyx_memviewsl…
2916 static double __pyx_f_8openTSNE_13kl_divergence_kl_divergence_exact(__Pyx_memviewslice __pyx_v_P, _… in __pyx_f_8openTSNE_13kl_divergence_kl_divergence_exact() argument
3017 …e *) ( /* dim=1 */ ((char *) (((double *) ( /* dim=0 */ (__pyx_v_P.data + __pyx_t_8 * __pyx_v_P.st… in __pyx_f_8openTSNE_13kl_divergence_kl_divergence_exact()
3171 __Pyx_memviewslice __pyx_v_P = { 0, 0, { 0 }, { 0 }, { 0 } }; in __pyx_pw_8openTSNE_13kl_divergence_1kl_divergence_exact() local
3214 …__pyx_v_P = __Pyx_PyObject_to_MemoryviewSlice_d_dc_double(values[0], PyBUF_WRITABLE); if (unlikely… in __pyx_pw_8openTSNE_13kl_divergence_1kl_divergence_exact()
3225 …__pyx_r = __pyx_pf_8openTSNE_13kl_divergence_kl_divergence_exact(__pyx_self, __pyx_v_P, __pyx_v_em… in __pyx_pw_8openTSNE_13kl_divergence_1kl_divergence_exact()
3232 …divergence_exact(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_P, __Pyx_memviewsl… in __pyx_pf_8openTSNE_13kl_divergence_kl_divergence_exact() argument
3241 …__pyx_t_1 = PyFloat_FromDouble(__pyx_f_8openTSNE_13kl_divergence_kl_divergence_exact(__pyx_v_P, __… in __pyx_pf_8openTSNE_13kl_divergence_kl_divergence_exact()
3253 __PYX_XDEC_MEMVIEW(&__pyx_v_P, 1); in __pyx_pf_8openTSNE_13kl_divergence_kl_divergence_exact()
|
| H A D | _tsne.cpp | 3255 __Pyx_memviewslice __pyx_v_P = { 0, 0, { 0 }, { 0 }, { 0 } }; in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity() local
3376 __pyx_v_P = __pyx_t_5; in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity()
3965 …__pyx_v_P.data + __pyx_t_30 * __pyx_v_P.strides[0]) )) + __pyx_t_29)) )) = ((*((double *) ( /* dim… in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity()
4002 …e *) ( /* dim=1 */ ((char *) (((double *) ( /* dim=0 */ (__pyx_v_P.data + __pyx_t_23 * __pyx_v_P.s… in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity()
4043 __PYX_INC_MEMVIEW(&__pyx_v_P, 0); in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity()
4044 __pyx_r = __pyx_v_P; in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity()
4075 __PYX_XDEC_MEMVIEW(&__pyx_v_P, 1); in __pyx_f_8openTSNE_5_tsne_compute_gaussian_perplexity()
|