| /dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/ |
| H A D | Hmmer.pm | 243 my $input = $self->_setinput(@_);
270 my $input = $self->_setinput(@_);
335 my $input = $self->_setinput(@_);
352 my $input = $self->_setinput(@_);
366 sub _setinput { subroutine
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| H A D | StandAloneNCBIBlast.pm | 260 …my $infilename1 = $self->_setinput($executable, $input1) || $self->throw("$input1 not Bio::Seq obj…
303 my ($infilename1, $infilename2 ) = $self->_setinput($executable,
345 …my $infilename1 = $self->_setinput($executable, $input1) || $self->throw("$input1 not Bio::Seq obj…
379 my ($infilename1, $infilename2 ) = $self->_setinput($executable,
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| H A D | RepeatMasker.pm | 256 $infile = $self->_setinput($seq);
415 sub _setinput { subroutine
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| H A D | FootPrinter.pm | 307 my $infile = $self->_setinput(@seq);
451 sub _setinput { subroutine
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| H A D | Promoterwise.pm | 226 my ($infile1,$infile2)= $self->_setinput($seq1, $seq2);
281 sub _setinput { subroutine
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| H A D | Eponine.pm | 328 my $infile = $self->_setinput($seq);
356 sub _setinput { subroutine
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| H A D | Genewise.pm | 266 my ($infile1,$infile2)= $self->_setinput($seq1, $seq2);
334 sub _setinput { subroutine
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| H A D | Pseudowise.pm | 232 my @files = $self->_setinput(@args);
331 sub _setinput { subroutine
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| /dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/Alignment/ |
| H A D | Kalign.pm | 310 $infilename = $self->_setinput($input);
312 $infilename = $self->_setinput($self->in);
372 sub _setinput { subroutine
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| H A D | Muscle.pm | 278 $infilename = $self->_setinput($input);
281 $infilename = $self->_setinput( $self->in );
456 sub _setinput { subroutine
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| H A D | MSAProbs.pm | 304 $infilename = $self->_setinput($input);
306 $infilename = $self->_setinput($self->infile);
561 sub _setinput { subroutine
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| H A D | Lagan.pm | 197 my ($infile1, $infile2) = $self->_setinput($executable, $input1, $input2);
245 ($infiles, $tree) = $self->_setinput($executable, $input1, $tree);
320 sub _setinput { subroutine
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| H A D | Amap.pm | 309 my ($infilename) = $self->_setinput($input);
367 sub _setinput { subroutine
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| H A D | Probalign.pm | 298 my ($infilename) = $self->_setinput($input);
356 sub _setinput { subroutine
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| H A D | Probcons.pm | 327 my ($infilename) = $self->_setinput($input);
387 sub _setinput { subroutine
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| H A D | Proda.pm | 298 my ($infilename) = $self->_setinput($input);
360 sub _setinput { subroutine
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| H A D | Sim4.pm | 253 ($est_first,$infile1,$infile2)= $self->_setinput($self->cdna_seq,$self->genomic_seq);
319 sub _setinput { subroutine
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| /dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/Phylo/ |
| H A D | LVB.pm | 267 $infilename = $self->_setinput($input);
380 sub _setinput { subroutine
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| /dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/Phylo/Phylip/ |
| H A D | ProtPars.pm | 294 $infilename = $self->_setinput($input);
399 sub _setinput { subroutine
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| H A D | SeqBoot.pm | 333 $infilename = $self->_setinput($input);
423 sub _setinput { subroutine
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| H A D | DrawGram.pm | 207 my ($infilename) = $self->_setinput($input);
303 sub _setinput { subroutine
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| H A D | DrawTree.pm | 230 my ($infilename) = $self->_setinput($input);
326 sub _setinput { subroutine
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| H A D | Consense.pm | 354 $infilename = $self->_setinput($input);
450 sub _setinput { subroutine
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| H A D | ProtDist.pm | 387 $infilename = $self->_setinput($input);
484 sub _setinput { subroutine
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| H A D | Neighbor.pm | 372 $infilename = $self->_setinput($input);
467 sub _setinput { subroutine
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