| /dports/biology/plink/plink-ng-79b2df8c/1.9/ |
| H A D | plink_perm.h | 103 HEADER_INLINE void unroll_incr_4_8(const __m128i* acc4, __m128i* acc8, uint32_t acc4_vec_ct) { in unroll_incr_4_8() argument
107 for (vidx = 0; vidx < acc4_vec_ct; vidx++) { in unroll_incr_4_8()
117 HEADER_INLINE void unroll_zero_incr_4_8(__m128i* acc4, __m128i* acc8, uint32_t acc4_vec_ct) { in unroll_zero_incr_4_8() argument
121 for (vidx = 0; vidx < acc4_vec_ct; vidx++) { in unroll_zero_incr_4_8()
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| H A D | plink_family.c | 2930 uintptr_t acc4_vec_ct = perm_vec_ct128 * 4; in dfam_sibship_or_unrelated_perm_calc() local
3007 fill_vvec_zero(acc4_vec_ct, acc4); in dfam_sibship_or_unrelated_perm_calc()
3040 for (uii = 0; uii < acc4_vec_ct; uii++) { in dfam_sibship_or_unrelated_perm_calc()
3079 unroll_incr_4_8(acc4, acc8, acc4_vec_ct); in dfam_sibship_or_unrelated_perm_calc()
3131 fill_vvec_zero(acc4_vec_ct, acc4); in dfam_sibship_or_unrelated_perm_calc()
3169 unroll_incr_4_8(acc4, acc8, acc4_vec_ct); in dfam_sibship_or_unrelated_perm_calc()
3514 fill_vvec_zero(acc4_vec_ct, acc4); in dfam_perm_thread()
3594 unroll_incr_4_8(acc4, acc8, acc4_vec_ct); in dfam_perm_thread()
3624 fill_vvec_zero(acc4_vec_ct, acc4); in dfam_perm_thread()
3638 unroll_zero_incr_4_8(acc4, acc8, acc4_vec_ct); in dfam_perm_thread()
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| /dports/biology/plink/plink-ng-79b2df8c/2.0/ |
| H A D | plink2_filter.cc | 3276 const uint32_t acc4_vec_ct = acc1_vec_ct * 4; in LoadSampleMissingCtsThread() local
3285 VecW* missing_hc_acc8 = &(missing_hc_acc4[acc4_vec_ct]); in LoadSampleMissingCtsThread()
3295 missing_dosage_acc8 = &(missing_dosage_acc4[acc4_vec_ct]); in LoadSampleMissingCtsThread()
3303 VecW* hethap_acc8 = &(hethap_acc4[acc4_vec_ct]); in LoadSampleMissingCtsThread()
3361 Vcount0Incr4To8(acc4_vec_ct, missing_hc_acc4, missing_hc_acc8); in LoadSampleMissingCtsThread()
3363 Vcount0Incr4To8(acc4_vec_ct, missing_dosage_acc4, missing_dosage_acc8); in LoadSampleMissingCtsThread()
3380 Vcount0Incr4To8(acc4_vec_ct, hethap_acc4, hethap_acc8); in LoadSampleMissingCtsThread()
3395 VcountIncr4To8(missing_hc_acc4, acc4_vec_ct, missing_hc_acc8); in LoadSampleMissingCtsThread()
3398 VcountIncr4To8(missing_dosage_acc4, acc4_vec_ct, missing_dosage_acc8); in LoadSampleMissingCtsThread()
3401 VcountIncr4To8(hethap_acc4, acc4_vec_ct, hethap_acc8); in LoadSampleMissingCtsThread()
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| H A D | plink2_misc.cc | 5690 VecW* acc8_0 = &(acc4_0[acc4_vec_ct]); in UpdateDenseSampleCounts3()
5692 VecW* acc8_2 = &(acc4_2[acc4_vec_ct]); in UpdateDenseSampleCounts3()
5694 VecW* acc8_1 = &(acc4_1[acc4_vec_ct]); in UpdateDenseSampleCounts3()
5733 VecW* acc8_0 = &(acc4_0[acc4_vec_ct]); in UpdateDenseSampleCounts2()
5735 VecW* acc8_2 = &(acc4_2[acc4_vec_ct]); in UpdateDenseSampleCounts2()
6276 const uintptr_t acc4_vec_ct = acc2_vec_ct * 2; in SampleCountsThread() local
6283 VecW* acc8_0 = &(acc4_0[acc4_vec_ct]); in SampleCountsThread()
6284 VcountIncr4To8(acc4_0, acc4_vec_ct, acc8_0); in SampleCountsThread()
6290 VecW* acc8_2 = &(acc4_2[acc4_vec_ct]); in SampleCountsThread()
6291 VcountIncr4To8(acc4_2, acc4_vec_ct, acc8_2); in SampleCountsThread()
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| H A D | plink2_cmdline.h | 1571 HEADER_INLINE void VcountIncr4To8(const VecW* acc4_iter, uint32_t acc4_vec_ct, VecW* acc8_iter) { in VcountIncr4To8() argument
1573 for (uint32_t vidx = 0; vidx != acc4_vec_ct; ++vidx) { in VcountIncr4To8()
1583 HEADER_INLINE void Vcount0Incr4To8(uint32_t acc4_vec_ct, VecW* acc4_iter, VecW* acc8_iter) { in Vcount0Incr4To8() argument
1585 for (uint32_t vidx = 0; vidx != acc4_vec_ct; ++vidx) { in Vcount0Incr4To8()
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| H A D | plink2_matrix_calc.cc | 6127 const uint32_t acc4_vec_ct = acc1_vec_ct * 4; in ScoreReport() local
6177 VecW* missing_diploid_acc8 = &(missing_diploid_acc4[acc4_vec_ct]); in ScoreReport()
6180 VecW* missing_haploid_acc8 = &(missing_haploid_acc4[acc4_vec_ct]); in ScoreReport()
6182 ZeroVecArr(acc4_vec_ct, missing_diploid_acc4); in ScoreReport()
6185 ZeroVecArr(acc4_vec_ct, missing_haploid_acc4); in ScoreReport()
6365 Vcount0Incr4To8(acc4_vec_ct, missing_haploid_acc4, missing_haploid_acc8); in ScoreReport()
6392 Vcount0Incr4To8(acc4_vec_ct, missing_diploid_acc4, missing_diploid_acc8); in ScoreReport()
6406 Vcount0Incr4To8(acc4_vec_ct, missing_haploid_acc4, missing_haploid_acc8); in ScoreReport()
6597 VcountIncr4To8(missing_diploid_acc4, acc4_vec_ct, missing_diploid_acc8); in ScoreReport()
6599 VcountIncr4To8(missing_haploid_acc4, acc4_vec_ct, missing_haploid_acc8); in ScoreReport()
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| H A D | plink2_export.cc | 955 const uint32_t acc4_vec_ct = acc1_vec_ct * 4; variable
958 VecW* missing_acc8 = &(missing_acc4[acc4_vec_ct]);
1157 Vcount0Incr4To8(acc4_vec_ct, missing_acc4, missing_acc8);
1182 VcountIncr4To8(missing_acc4, acc4_vec_ct, missing_acc8);
1551 const uint32_t acc4_vec_ct = acc1_vec_ct * 4; in ExportBgen11Thread() local
1555 VecW* missing_acc8 = &(missing_acc4[acc4_vec_ct]); in ExportBgen11Thread()
1698 Vcount0Incr4To8(acc4_vec_ct, missing_acc4, missing_acc8); in ExportBgen11Thread()
1713 VcountIncr4To8(missing_acc4, acc4_vec_ct, missing_acc8); in ExportBgen11Thread()
2340 const uint32_t acc4_vec_ct = acc1_vec_ct * 4; in ExportBgen13Thread() local
2344 VecW* missing_acc8 = &(missing_acc4[acc4_vec_ct]); in ExportBgen13Thread()
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