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/dports/biology/jalview/jalview/test/jalview/datamodel/
H A DAlignedCodonFrameTest.java529 acf.addMap(dna, pep, map); in testGetCoveringMapping()
532 acf = new AlignedCodonFrame(); in testGetCoveringMapping()
535 acf.addMap(dna, pep, map2); in testGetCoveringMapping()
541 acf = new AlignedCodonFrame(); in testGetCoveringMapping()
544 acf.addMap(dna, pep, map3); in testGetCoveringMapping()
552 acf = new AlignedCodonFrame(); in testGetCoveringMapping()
555 acf.addMap(dna, pep, map4); in testGetCoveringMapping()
674 acf.addMap(dna, pep, map); in testGetCoveringCodonMapping()
678 acf = new AlignedCodonFrame(); in testGetCoveringCodonMapping()
681 acf.addMap(dna, pep, map2); in testGetCoveringCodonMapping()
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/dports/audio/exhale/exhale-7688ab502ecbd1203bde1e605676f7440cd9fd5e/src/lib/
H A DlinearPrediction.cpp152 acf[4] = 0; in calcParCorCoeffs()
167 acf[0] = (acf[0] - INT_MIN/*eps*/) >> 31; in calcParCorCoeffs()
178 pgOff = acf[0]; in calcParCorCoeffs()
211 acf[0] = sampleMO * sampleMO; in calcParCorCoeffs()
212 acf[1] = 0; in calcParCorCoeffs()
217 acf[0] += sample * sample; in calcParCorCoeffs()
222 acf[0] = (acf[0] - INT_MIN/*eps*/) >> 31; in calcParCorCoeffs()
223 acf[1] = (acf[1] - (INT_MIN >> 1)) >> 31; in calcParCorCoeffs()
225 pgOff = acf[0]; in calcParCorCoeffs()
229 sampleMO = (acf[1] * -512) / (acf[0] + LP_EPS); in calcParCorCoeffs()
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/dports/math/octave-forge-signal/signal-1.4.1/inst/
H A Dlevinson.m23 ## toeplitz(acf(1:p)) * x = -acf(2:p+1).
26 ## function acf.
29 ## p defaults to length(acf)-1.
57 elseif( ~isvector(acf) || length(acf)<2 )
62 if ((nargin == 1)||(p>=length(acf))) p = length(acf) - 1; endif
63 if( columns(acf)>1 ) acf=acf(:); endif # force a column vector
68 R = toeplitz(acf(1:p), conj(acf(1:p)));
69 a = R \ -acf(2:p+1);
71 v = real( a*conj(acf(1:p+1)) );
76 g = -acf(2)/acf(1);
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/dports/math/R-cran-memisc/memisc/R/
H A Dyy-mtable-ext-AchimZeileis.R115 acf <- array(dim = c(length(nam), 6, length(cf)), functionVar
121 coef = acf,
167 coef = acf,
195 acf <- array(dim = c(NCOL(cf), 6, NROW(cf)), functionVar
199 acf[, 1, ] <- t(cf)
200 acf[, 2, ] <- t(s$standard.errors)
203 acf[, 3, ] <- acf[, 1, ] / acf[, 2, ]
204 acf[, 4, ] <- 2 * pnorm(abs(acf[, 3, ]), lower.tail = FALSE)
208 acf[, 5, ] <- acf[, 1, ] - cval * acf[, 2, ]
209 acf[, 6, ] <- acf[, 1, ] + cval * acf[, 2, ]
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/dports/devel/R-cran-broom/broom/man/
H A Dtidy.acf.Rd3 \name{tidy.acf}
4 \alias{tidy.acf}
5 \title{Tidy a(n) acf object}
7 \method{tidy}{acf}(x, ...)
10 \item{x}{An \code{acf} object created by \code{\link[stats:acf]{stats::acf()}}, \code{\link[stats:a…
11 \code{\link[stats:acf]{stats::ccf()}}.}
33 tidy(acf(lh, plot = FALSE))
38 …=tidy]{tidy()}}, \code{\link[stats:acf]{stats::acf()}}, \code{\link[stats:acf]{stats::pacf()}}, \c…
48 \item{acf}{Autocorrelation.}
/dports/math/R/R-4.1.2/src/library/stats/man/
H A Dacf.Rd1 % File src/library/stats/man/acf.Rd
6 \name{acf}
7 \alias{acf}
11 \alias{[.acf}
21 acf(x, lag.max = NULL,
33 \method{[}{acf}(x, i, j)
64 the estimated acf.}
93 \code{"acf"}.
99 \code{"acf"}.
122 acf(lh)
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H A Dplot.acf.Rd1 % File src/library/stats/man/plot.acf.Rd
6 \name{plot.acf}
7 \alias{plot.acf}
10 Plot method for objects of class \code{"acf"}.
13 \method{plot}{acf}(x, ci = 0.95, type = "h", xlab = "Lag", ylab = NULL,
26 \item{x}{an object of class \code{"acf"}.}
54 The confidence interval plotted in \code{plot.acf} is based on an
59 \seealso{\code{\link{acf}} which calls \code{plot.acf} by default.
67 acf(z4)
68 acf(z7, max.mfrow = 7) # squeeze onto 1 page
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/dports/math/libRmath/R-4.1.1/src/library/stats/man/
H A Dacf.Rd1 % File src/library/stats/man/acf.Rd
6 \name{acf}
7 \alias{acf}
11 \alias{[.acf}
21 acf(x, lag.max = NULL,
33 \method{[}{acf}(x, i, j)
64 the estimated acf.}
93 \code{"acf"}.
99 \code{"acf"}.
122 acf(lh)
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H A Dplot.acf.Rd1 % File src/library/stats/man/plot.acf.Rd
6 \name{plot.acf}
7 \alias{plot.acf}
10 Plot method for objects of class \code{"acf"}.
13 \method{plot}{acf}(x, ci = 0.95, type = "h", xlab = "Lag", ylab = NULL,
26 \item{x}{an object of class \code{"acf"}.}
54 The confidence interval plotted in \code{plot.acf} is based on an
59 \seealso{\code{\link{acf}} which calls \code{plot.acf} by default.
67 acf(z4)
68 acf(z7, max.mfrow = 7) # squeeze onto 1 page
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/dports/devel/libunit/unit-1.26.1/src/
H A Dnxt_http_return.c25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument
39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init()
41 if (acf->location.length > 0) { in nxt_http_return_init()
42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init()
43 acf->location.length)) in nxt_http_return_init()
45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init()
53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init()
54 acf->location.length); in nxt_http_return_init()
55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init()
62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init()
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/dports/www/unit-java/unit-1.26.1/src/
H A Dnxt_http_return.c25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument
39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init()
41 if (acf->location.length > 0) { in nxt_http_return_init()
42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init()
43 acf->location.length)) in nxt_http_return_init()
45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init()
53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init()
54 acf->location.length); in nxt_http_return_init()
55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init()
62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init()
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/dports/www/unit/unit-1.26.1/src/
H A Dnxt_http_return.c25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument
39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init()
41 if (acf->location.length > 0) { in nxt_http_return_init()
42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init()
43 acf->location.length)) in nxt_http_return_init()
45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init()
53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init()
54 acf->location.length); in nxt_http_return_init()
55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init()
62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init()
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/dports/www/unit-python/unit-1.26.1/src/
H A Dnxt_http_return.c25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument
39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init()
41 if (acf->location.length > 0) { in nxt_http_return_init()
42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init()
43 acf->location.length)) in nxt_http_return_init()
45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init()
53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init()
54 acf->location.length); in nxt_http_return_init()
55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init()
62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init()
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/dports/www/unit-php/unit-1.26.1/src/
H A Dnxt_http_return.c25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument
39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init()
41 if (acf->location.length > 0) { in nxt_http_return_init()
42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init()
43 acf->location.length)) in nxt_http_return_init()
45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init()
53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init()
54 acf->location.length); in nxt_http_return_init()
55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init()
62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init()
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/dports/www/unit-perl/unit-1.26.1/src/
H A Dnxt_http_return.c25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument
39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init()
41 if (acf->location.length > 0) { in nxt_http_return_init()
42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init()
43 acf->location.length)) in nxt_http_return_init()
45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init()
53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init()
54 acf->location.length); in nxt_http_return_init()
55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init()
62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init()
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/dports/math/R/R-4.1.2/src/library/stats/R/
H A Dacf.R19 acf <-
51 acf <- .Call(C_acf, x, lag.max, type == "correlation") functionVar
53 acf.out <- structure(list(acf = acf, type = type, n.used = sampleT, nameattr
88 acf <- drop(acf(x, lag.max = lag.max, plot = FALSE, functionVar
89 na.action = na.action)$acf)
90 pacf <- .Call(C_pacf1, acf, lag.max)
219 y <- c(rev(acf.out$acf[-1,2,1]), acf.out$acf[,1,2])
220 acf.out$acf <- array(y, dim=c(length(y),1L,1L))
234 x$acf <- x$acf[ii, j, j, drop = FALSE]
246 if(type != 2) x$acf <- round(x$acf, digits)
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/dports/math/libRmath/R-4.1.1/src/library/stats/R/
H A Dacf.R19 acf <-
51 acf <- .Call(C_acf, x, lag.max, type == "correlation") functionVar
53 acf.out <- structure(list(acf = acf, type = type, n.used = sampleT, nameattr
88 acf <- drop(acf(x, lag.max = lag.max, plot = FALSE, functionVar
89 na.action = na.action)$acf)
90 pacf <- .Call(C_pacf1, acf, lag.max)
219 y <- c(rev(acf.out$acf[-1,2,1]), acf.out$acf[,1,2])
220 acf.out$acf <- array(y, dim=c(length(y),1L,1L))
234 x$acf <- x$acf[ii, j, j, drop = FALSE]
246 if(type != 2) x$acf <- round(x$acf, digits)
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/dports/science/dynare/dynare-4.6.4/tests/moments/
H A Dexample1_hp_test.mod89 acf = zeros(6);
90 [junk, acf(:,1)] = sample_autocovariance([y_filtered ],5);
91 [junk, acf(:,2)] = sample_autocovariance([c_filtered ],5);
92 [junk, acf(:,3)] = sample_autocovariance([k_filtered ],5);
93 [junk, acf(:,4)] = sample_autocovariance([a_filtered ],5);
94 [junk, acf(:,5)] = sample_autocovariance([h_filtered ],5);
95 [junk, acf(:,6)] = sample_autocovariance([b_filtered ],5);
96 autocorr_filtered_all_shocks=acf(2:end,:)';
123 acf = zeros(6);
124 [junk, acf(:,1)] = sample_autocovariance([y_filtered ],5);
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/dports/science/gromacs/gromacs-2021.4/src/gromacs/correlationfunctions/
H A Dautocorr.cpp84 static t_acf acf; variable
722 { &acf.nout }, in add_acf_pargs()
728 { &acf.bFour }, in add_acf_pargs()
764 acf.mode = 0; in add_acf_pargs()
765 acf.nrestart = 1; in add_acf_pargs()
766 acf.nout = -1; in add_acf_pargs()
767 acf.P = 0; in add_acf_pargs()
772 acf.tendfit = -1; in add_acf_pargs()
798 switch (acf.P) in do_autocorr()
807 acf.bNormalize, bDebugMode(), acf.tbeginfit, acf.tendfit, acf.fitfn); in do_autocorr()
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/dports/math/gretl/gretl-2021d/plugin/
H A Das197.c3 double *acf, double *cvli, int ma,
190 double *acf, double *cvli, int ma, in tw_acf() argument
198 acf[0] = cvli[0] = 1.0; in tw_acf()
203 acf[i] = cvli[i] = 0; in tw_acf()
218 acf[0] += theta[k] * theta[k]; in tw_acf()
255 acf[j] += acf[kc+1] * alpha[kc-j]; in tw_acf()
263 acf[0] *= 0.5; in tw_acf()
269 cvli[j] = (acf[j] + ak * acf[k+1-j]) / div; in tw_acf()
272 acf[j] = cvli[j]; in tw_acf()
280 acf[i] += phi[j] * acf[i-j-1]; in tw_acf()
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/dports/audio/aubio/aubio-0.4.9/src/tempo/
H A Dbeattracking.c88 p->acf = new_fvec (winlen); in new_aubio_beattracking()
117 del_fvec (p->acf); in del_aubio_beattracking()
150 aubio_autocorr (dfframe, bt->acf); in aubio_beattracking_do()
272 three_energy += acf->data[3 * gp + k]; in fvec_gettimesig()
273 four_energy += acf->data[4 * gp + k]; in fvec_gettimesig()
278 three_energy += acf->data[3 * gp + k] + acf->data[6 * gp + k]; in fvec_gettimesig()
279 four_energy += acf->data[4 * gp + k] + acf->data[2 * gp + k]; in fvec_gettimesig()
298 uint_t acflen = bt->acf->length; in aubio_beattracking_checkstate()
300 fvec_t *acf = bt->acf; in aubio_beattracking_checkstate() local
309 acfout->data[i] += acf->data[i * a + b - 1]; in aubio_beattracking_checkstate()
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/dports/audio/py-aubio/aubio-0.4.9/src/tempo/
H A Dbeattracking.c88 p->acf = new_fvec (winlen);
117 del_fvec (p->acf);
150 aubio_autocorr (dfframe, bt->acf);
272 three_energy += acf->data[3 * gp + k];
273 four_energy += acf->data[4 * gp + k];
278 three_energy += acf->data[3 * gp + k] + acf->data[6 * gp + k];
279 four_energy += acf->data[4 * gp + k] + acf->data[2 * gp + k];
298 uint_t acflen = bt->acf->length;
300 fvec_t *acf = bt->acf;
309 acfout->data[i] += acf->data[i * a + b - 1];
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/dports/editors/kile/kile-09ee4ef0417165b93da82c1fc057b9e1713a0c05/src/data/complete/tex/
H A Dglosstex.cwl70 \acf{label}
71 \acf[pageref-mode]{label}
72 \acf(list)[pageref-mode]{label}
73 \acf<form>(list)[pageref-mode]{label}
74 \acf[, lparen , rparen ,]<form>(list)[pageref-mode]{label}
76 \acf*{label}
77 \acf*[pageref-mode]{label}
78 \acf*(list)[pageref-mode]{label}
79 \acf*<form>(list)[pageref-mode]{label}
80 \acf*[, lparen , rparen ,]<form>(list)[pageref-mode]{label}
/dports/editors/texstudio/texstudio-4.1.2/completion/
H A Dglosstex.cwl70 \acf{label}
71 \acf[pageref-mode]{label}
72 \acf(list)[pageref-mode]{label}
73 \acf<form>(list)[pageref-mode]{label}
74 \acf[, lparen , rparen ,]<form>(list)[pageref-mode]{label}
76 \acf*{label}
77 \acf*[pageref-mode]{label}
78 \acf*(list)[pageref-mode]{label}
79 \acf*<form>(list)[pageref-mode]{label}
80 \acf*[, lparen , rparen ,]<form>(list)[pageref-mode]{label}
/dports/graphics/blender/blender-2.91.0/source/blender/editors/animation/
H A Danim_channels_defines.c125 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_generic_root_backdrop()
155 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_generic_dataexpand_backdrop()
263 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_generic_channel_backdrop()
322 if (acf && acf->get_indent_level) { in acf_generic_basic_offset()
887 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_group_backdrop()
1161 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_nla_controls_backdrop()
3932 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_nlaaction_backdrop()
4172 if (acf) { in ANIM_channel_debug_print_info()
4204 if ((acf) && (!acf->has_setting || acf->has_setting(ac, ale, setting))) { in ANIM_channel_setting_get()
4293 if ((acf) && (!acf->has_setting || acf->has_setting(ac, ale, setting))) { in ANIM_channel_setting_set()
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