/dports/biology/jalview/jalview/test/jalview/datamodel/ |
H A D | AlignedCodonFrameTest.java | 529 acf.addMap(dna, pep, map); in testGetCoveringMapping() 532 acf = new AlignedCodonFrame(); in testGetCoveringMapping() 535 acf.addMap(dna, pep, map2); in testGetCoveringMapping() 541 acf = new AlignedCodonFrame(); in testGetCoveringMapping() 544 acf.addMap(dna, pep, map3); in testGetCoveringMapping() 552 acf = new AlignedCodonFrame(); in testGetCoveringMapping() 555 acf.addMap(dna, pep, map4); in testGetCoveringMapping() 674 acf.addMap(dna, pep, map); in testGetCoveringCodonMapping() 678 acf = new AlignedCodonFrame(); in testGetCoveringCodonMapping() 681 acf.addMap(dna, pep, map2); in testGetCoveringCodonMapping() [all …]
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/dports/audio/exhale/exhale-7688ab502ecbd1203bde1e605676f7440cd9fd5e/src/lib/ |
H A D | linearPrediction.cpp | 152 acf[4] = 0; in calcParCorCoeffs() 167 acf[0] = (acf[0] - INT_MIN/*eps*/) >> 31; in calcParCorCoeffs() 178 pgOff = acf[0]; in calcParCorCoeffs() 211 acf[0] = sampleMO * sampleMO; in calcParCorCoeffs() 212 acf[1] = 0; in calcParCorCoeffs() 217 acf[0] += sample * sample; in calcParCorCoeffs() 222 acf[0] = (acf[0] - INT_MIN/*eps*/) >> 31; in calcParCorCoeffs() 223 acf[1] = (acf[1] - (INT_MIN >> 1)) >> 31; in calcParCorCoeffs() 225 pgOff = acf[0]; in calcParCorCoeffs() 229 sampleMO = (acf[1] * -512) / (acf[0] + LP_EPS); in calcParCorCoeffs() [all …]
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/dports/math/octave-forge-signal/signal-1.4.1/inst/ |
H A D | levinson.m | 23 ## toeplitz(acf(1:p)) * x = -acf(2:p+1). 26 ## function acf. 29 ## p defaults to length(acf)-1. 57 elseif( ~isvector(acf) || length(acf)<2 ) 62 if ((nargin == 1)||(p>=length(acf))) p = length(acf) - 1; endif 63 if( columns(acf)>1 ) acf=acf(:); endif # force a column vector 68 R = toeplitz(acf(1:p), conj(acf(1:p))); 69 a = R \ -acf(2:p+1); 71 v = real( a*conj(acf(1:p+1)) ); 76 g = -acf(2)/acf(1); [all …]
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/dports/math/R-cran-memisc/memisc/R/ |
H A D | yy-mtable-ext-AchimZeileis.R | 115 acf <- array(dim = c(length(nam), 6, length(cf)), functionVar 121 coef = acf, 167 coef = acf, 195 acf <- array(dim = c(NCOL(cf), 6, NROW(cf)), functionVar 199 acf[, 1, ] <- t(cf) 200 acf[, 2, ] <- t(s$standard.errors) 203 acf[, 3, ] <- acf[, 1, ] / acf[, 2, ] 204 acf[, 4, ] <- 2 * pnorm(abs(acf[, 3, ]), lower.tail = FALSE) 208 acf[, 5, ] <- acf[, 1, ] - cval * acf[, 2, ] 209 acf[, 6, ] <- acf[, 1, ] + cval * acf[, 2, ] [all …]
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/dports/devel/R-cran-broom/broom/man/ |
H A D | tidy.acf.Rd | 3 \name{tidy.acf} 4 \alias{tidy.acf} 5 \title{Tidy a(n) acf object} 7 \method{tidy}{acf}(x, ...) 10 \item{x}{An \code{acf} object created by \code{\link[stats:acf]{stats::acf()}}, \code{\link[stats:a… 11 \code{\link[stats:acf]{stats::ccf()}}.} 33 tidy(acf(lh, plot = FALSE)) 38 …=tidy]{tidy()}}, \code{\link[stats:acf]{stats::acf()}}, \code{\link[stats:acf]{stats::pacf()}}, \c… 48 \item{acf}{Autocorrelation.}
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/dports/math/R/R-4.1.2/src/library/stats/man/ |
H A D | acf.Rd | 1 % File src/library/stats/man/acf.Rd 6 \name{acf} 7 \alias{acf} 11 \alias{[.acf} 21 acf(x, lag.max = NULL, 33 \method{[}{acf}(x, i, j) 64 the estimated acf.} 93 \code{"acf"}. 99 \code{"acf"}. 122 acf(lh) [all …]
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H A D | plot.acf.Rd | 1 % File src/library/stats/man/plot.acf.Rd 6 \name{plot.acf} 7 \alias{plot.acf} 10 Plot method for objects of class \code{"acf"}. 13 \method{plot}{acf}(x, ci = 0.95, type = "h", xlab = "Lag", ylab = NULL, 26 \item{x}{an object of class \code{"acf"}.} 54 The confidence interval plotted in \code{plot.acf} is based on an 59 \seealso{\code{\link{acf}} which calls \code{plot.acf} by default. 67 acf(z4) 68 acf(z7, max.mfrow = 7) # squeeze onto 1 page [all …]
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/dports/math/libRmath/R-4.1.1/src/library/stats/man/ |
H A D | acf.Rd | 1 % File src/library/stats/man/acf.Rd 6 \name{acf} 7 \alias{acf} 11 \alias{[.acf} 21 acf(x, lag.max = NULL, 33 \method{[}{acf}(x, i, j) 64 the estimated acf.} 93 \code{"acf"}. 99 \code{"acf"}. 122 acf(lh) [all …]
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H A D | plot.acf.Rd | 1 % File src/library/stats/man/plot.acf.Rd 6 \name{plot.acf} 7 \alias{plot.acf} 10 Plot method for objects of class \code{"acf"}. 13 \method{plot}{acf}(x, ci = 0.95, type = "h", xlab = "Lag", ylab = NULL, 26 \item{x}{an object of class \code{"acf"}.} 54 The confidence interval plotted in \code{plot.acf} is based on an 59 \seealso{\code{\link{acf}} which calls \code{plot.acf} by default. 67 acf(z4) 68 acf(z7, max.mfrow = 7) # squeeze onto 1 page [all …]
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/dports/devel/libunit/unit-1.26.1/src/ |
H A D | nxt_http_return.c | 25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument 39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init() 41 if (acf->location.length > 0) { in nxt_http_return_init() 42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init() 43 acf->location.length)) in nxt_http_return_init() 45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init() 53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init() 54 acf->location.length); in nxt_http_return_init() 55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init() 62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init() [all …]
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/dports/www/unit-java/unit-1.26.1/src/ |
H A D | nxt_http_return.c | 25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument 39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init() 41 if (acf->location.length > 0) { in nxt_http_return_init() 42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init() 43 acf->location.length)) in nxt_http_return_init() 45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init() 53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init() 54 acf->location.length); in nxt_http_return_init() 55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init() 62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init() [all …]
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/dports/www/unit/unit-1.26.1/src/ |
H A D | nxt_http_return.c | 25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument 39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init() 41 if (acf->location.length > 0) { in nxt_http_return_init() 42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init() 43 acf->location.length)) in nxt_http_return_init() 45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init() 53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init() 54 acf->location.length); in nxt_http_return_init() 55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init() 62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init() [all …]
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/dports/www/unit-python/unit-1.26.1/src/ |
H A D | nxt_http_return.c | 25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument 39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init() 41 if (acf->location.length > 0) { in nxt_http_return_init() 42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init() 43 acf->location.length)) in nxt_http_return_init() 45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init() 53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init() 54 acf->location.length); in nxt_http_return_init() 55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init() 62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init() [all …]
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/dports/www/unit-php/unit-1.26.1/src/ |
H A D | nxt_http_return.c | 25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument 39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init() 41 if (acf->location.length > 0) { in nxt_http_return_init() 42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init() 43 acf->location.length)) in nxt_http_return_init() 45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init() 53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init() 54 acf->location.length); in nxt_http_return_init() 55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init() 62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init() [all …]
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/dports/www/unit-perl/unit-1.26.1/src/ |
H A D | nxt_http_return.c | 25 nxt_http_action_conf_t *acf) in nxt_http_return_init() argument 39 conf->status = nxt_conf_get_number(acf->ret); in nxt_http_return_init() 41 if (acf->location.length > 0) { in nxt_http_return_init() 42 if (nxt_is_complex_uri_encoded(acf->location.start, in nxt_http_return_init() 43 acf->location.length)) in nxt_http_return_init() 45 loc = nxt_str_dup(mp, &conf->location, &acf->location); in nxt_http_return_init() 53 encode = nxt_encode_complex_uri(NULL, acf->location.start, in nxt_http_return_init() 54 acf->location.length); in nxt_http_return_init() 55 loc->length = acf->location.length + encode * 2; in nxt_http_return_init() 62 nxt_encode_complex_uri(loc->start, acf->location.start, in nxt_http_return_init() [all …]
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/dports/math/R/R-4.1.2/src/library/stats/R/ |
H A D | acf.R | 19 acf <- 51 acf <- .Call(C_acf, x, lag.max, type == "correlation") functionVar 53 acf.out <- structure(list(acf = acf, type = type, n.used = sampleT, nameattr 88 acf <- drop(acf(x, lag.max = lag.max, plot = FALSE, functionVar 89 na.action = na.action)$acf) 90 pacf <- .Call(C_pacf1, acf, lag.max) 219 y <- c(rev(acf.out$acf[-1,2,1]), acf.out$acf[,1,2]) 220 acf.out$acf <- array(y, dim=c(length(y),1L,1L)) 234 x$acf <- x$acf[ii, j, j, drop = FALSE] 246 if(type != 2) x$acf <- round(x$acf, digits) [all …]
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/dports/math/libRmath/R-4.1.1/src/library/stats/R/ |
H A D | acf.R | 19 acf <- 51 acf <- .Call(C_acf, x, lag.max, type == "correlation") functionVar 53 acf.out <- structure(list(acf = acf, type = type, n.used = sampleT, nameattr 88 acf <- drop(acf(x, lag.max = lag.max, plot = FALSE, functionVar 89 na.action = na.action)$acf) 90 pacf <- .Call(C_pacf1, acf, lag.max) 219 y <- c(rev(acf.out$acf[-1,2,1]), acf.out$acf[,1,2]) 220 acf.out$acf <- array(y, dim=c(length(y),1L,1L)) 234 x$acf <- x$acf[ii, j, j, drop = FALSE] 246 if(type != 2) x$acf <- round(x$acf, digits) [all …]
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/dports/science/dynare/dynare-4.6.4/tests/moments/ |
H A D | example1_hp_test.mod | 89 acf = zeros(6); 90 [junk, acf(:,1)] = sample_autocovariance([y_filtered ],5); 91 [junk, acf(:,2)] = sample_autocovariance([c_filtered ],5); 92 [junk, acf(:,3)] = sample_autocovariance([k_filtered ],5); 93 [junk, acf(:,4)] = sample_autocovariance([a_filtered ],5); 94 [junk, acf(:,5)] = sample_autocovariance([h_filtered ],5); 95 [junk, acf(:,6)] = sample_autocovariance([b_filtered ],5); 96 autocorr_filtered_all_shocks=acf(2:end,:)'; 123 acf = zeros(6); 124 [junk, acf(:,1)] = sample_autocovariance([y_filtered ],5); [all …]
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/dports/science/gromacs/gromacs-2021.4/src/gromacs/correlationfunctions/ |
H A D | autocorr.cpp | 84 static t_acf acf; variable 722 { &acf.nout }, in add_acf_pargs() 728 { &acf.bFour }, in add_acf_pargs() 764 acf.mode = 0; in add_acf_pargs() 765 acf.nrestart = 1; in add_acf_pargs() 766 acf.nout = -1; in add_acf_pargs() 767 acf.P = 0; in add_acf_pargs() 772 acf.tendfit = -1; in add_acf_pargs() 798 switch (acf.P) in do_autocorr() 807 acf.bNormalize, bDebugMode(), acf.tbeginfit, acf.tendfit, acf.fitfn); in do_autocorr() [all …]
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/dports/math/gretl/gretl-2021d/plugin/ |
H A D | as197.c | 3 double *acf, double *cvli, int ma, 190 double *acf, double *cvli, int ma, in tw_acf() argument 198 acf[0] = cvli[0] = 1.0; in tw_acf() 203 acf[i] = cvli[i] = 0; in tw_acf() 218 acf[0] += theta[k] * theta[k]; in tw_acf() 255 acf[j] += acf[kc+1] * alpha[kc-j]; in tw_acf() 263 acf[0] *= 0.5; in tw_acf() 269 cvli[j] = (acf[j] + ak * acf[k+1-j]) / div; in tw_acf() 272 acf[j] = cvli[j]; in tw_acf() 280 acf[i] += phi[j] * acf[i-j-1]; in tw_acf() [all …]
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/dports/audio/aubio/aubio-0.4.9/src/tempo/ |
H A D | beattracking.c | 88 p->acf = new_fvec (winlen); in new_aubio_beattracking() 117 del_fvec (p->acf); in del_aubio_beattracking() 150 aubio_autocorr (dfframe, bt->acf); in aubio_beattracking_do() 272 three_energy += acf->data[3 * gp + k]; in fvec_gettimesig() 273 four_energy += acf->data[4 * gp + k]; in fvec_gettimesig() 278 three_energy += acf->data[3 * gp + k] + acf->data[6 * gp + k]; in fvec_gettimesig() 279 four_energy += acf->data[4 * gp + k] + acf->data[2 * gp + k]; in fvec_gettimesig() 298 uint_t acflen = bt->acf->length; in aubio_beattracking_checkstate() 300 fvec_t *acf = bt->acf; in aubio_beattracking_checkstate() local 309 acfout->data[i] += acf->data[i * a + b - 1]; in aubio_beattracking_checkstate() [all …]
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/dports/audio/py-aubio/aubio-0.4.9/src/tempo/ |
H A D | beattracking.c | 88 p->acf = new_fvec (winlen); 117 del_fvec (p->acf); 150 aubio_autocorr (dfframe, bt->acf); 272 three_energy += acf->data[3 * gp + k]; 273 four_energy += acf->data[4 * gp + k]; 278 three_energy += acf->data[3 * gp + k] + acf->data[6 * gp + k]; 279 four_energy += acf->data[4 * gp + k] + acf->data[2 * gp + k]; 298 uint_t acflen = bt->acf->length; 300 fvec_t *acf = bt->acf; 309 acfout->data[i] += acf->data[i * a + b - 1]; [all …]
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/dports/editors/kile/kile-09ee4ef0417165b93da82c1fc057b9e1713a0c05/src/data/complete/tex/ |
H A D | glosstex.cwl | 70 \acf{label} 71 \acf[pageref-mode]{label} 72 \acf(list)[pageref-mode]{label} 73 \acf<form>(list)[pageref-mode]{label} 74 \acf[, lparen , rparen ,]<form>(list)[pageref-mode]{label} 76 \acf*{label} 77 \acf*[pageref-mode]{label} 78 \acf*(list)[pageref-mode]{label} 79 \acf*<form>(list)[pageref-mode]{label} 80 \acf*[, lparen , rparen ,]<form>(list)[pageref-mode]{label}
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/dports/editors/texstudio/texstudio-4.1.2/completion/ |
H A D | glosstex.cwl | 70 \acf{label} 71 \acf[pageref-mode]{label} 72 \acf(list)[pageref-mode]{label} 73 \acf<form>(list)[pageref-mode]{label} 74 \acf[, lparen , rparen ,]<form>(list)[pageref-mode]{label} 76 \acf*{label} 77 \acf*[pageref-mode]{label} 78 \acf*(list)[pageref-mode]{label} 79 \acf*<form>(list)[pageref-mode]{label} 80 \acf*[, lparen , rparen ,]<form>(list)[pageref-mode]{label}
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/dports/graphics/blender/blender-2.91.0/source/blender/editors/animation/ |
H A D | anim_channels_defines.c | 125 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_generic_root_backdrop() 155 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_generic_dataexpand_backdrop() 263 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_generic_channel_backdrop() 322 if (acf && acf->get_indent_level) { in acf_generic_basic_offset() 887 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_group_backdrop() 1161 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_nla_controls_backdrop() 3932 short offset = (acf->get_offset) ? acf->get_offset(ac, ale) : 0; in acf_nlaaction_backdrop() 4172 if (acf) { in ANIM_channel_debug_print_info() 4204 if ((acf) && (!acf->has_setting || acf->has_setting(ac, ale, setting))) { in ANIM_channel_setting_get() 4293 if ((acf) && (!acf->has_setting || acf->has_setting(ac, ale, setting))) { in ANIM_channel_setting_set() [all …]
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