Searched refs:addToQualityAccuracy (Results 1 – 6 of 6) sorted by relevance
347 public void addToQualityAccuracy(final Read r){ in addToQualityAccuracy() method in ReadStats349 addToQualityAccuracy(r, 0); in addToQualityAccuracy()350 if(r.mate!=null){addToQualityAccuracy(r.mate, 1);} in addToQualityAccuracy()353 public void addToQualityAccuracy(final Read r, int pairnum){ in addToQualityAccuracy() method in ReadStats
632 if(MAKE_QAHIST){readstats.addToQualityAccuracy(r1);} in process()
1908 if(MAKE_QUALITY_ACCURACY){readstats.addToQualityAccuracy(r1);}
2052 if(MAKE_QUALITY_ACCURACY){readstats.addToQualityAccuracy(r1);} in run()
3173 if(MAKE_QUALITY_ACCURACY){readstats.addToQualityAccuracy(r1);} in addToHistograms()
552 if(MAKE_QUALITY_ACCURACY){readstats.addToQualityAccuracy(r);} in run()