Home
last modified time | relevance | path

Searched refs:age_fixed (Results 1 – 5 of 5) sorted by relevance

/dports/biology/phyml/phyml-3.3.20200621/src/
H A Dphyrex.c1548 disk->age_fixed == YES && in PHYREX_Update_Lindisk_List_Core()
1596 disk->age_fixed, in PHYREX_Update_Lindisk_List_Core()
1685 disk->age_fixed, in PHYREX_Print_Struct()
2299 assert(disk->age_fixed == NO); in PHYREX_Ldsk_To_Tree()
2633 if(disk->prev->age_fixed == NO) in PHYREX_Simulate_Disk_And_Node_Times()
2692 new_disk->age_fixed = YES; in PHYREX_Make_And_Connect_Tip_Disks()
3665 if(disk->age_fixed == YES) in PHYREX_Strip_And_Reconnect_Tree()
3687 if(disk->age_fixed == NO) in PHYREX_Strip_And_Reconnect_Tree()
3717 if(disk->age_fixed == NO) in PHYREX_Scale_All()
3859 if(disk->age_fixed == NO) in PHYREX_Lk_Time_Component()
[all …]
H A Dslfv.c667 if(disk->age_fixed == NO) in SLFV_Lk_Gaussian_Range()
702 if(disk->age_fixed == YES) return 0.0; in SLFV_Lk_Gaussian_Core()
790 if(disk->age_fixed == NO) n_evt++; in SLFV_Lk_Gaussian()
1669 tree->young_disk->age_fixed = YES; in SLFV_Simulate()
H A Dmcmc.c6671 if(disk->ldsk == NULL && disk->age_fixed == NO) n_disks_cur++; in MCMC_PHYREX_Indel_Disk()
6734 if(!disk->ldsk && disk->age_fixed == NO) in MCMC_PHYREX_Delete_Disk()
6985 if((disk->age_fixed) == NO && disk->ldsk && disk->ldsk->n_next > 1) in MCMC_PHYREX_Move_Disk_Updown()
7228 if(disk && disk->prev && disk->ldsk && disk->ldsk->n_next >= 1 && disk->age_fixed == NO) in MCMC_PHYREX_Swap_Disk()
7707 assert(target_disk[j]->age_fixed == NO); in MCMC_PHYREX_Delete_Hit()
8550 if(disk->age_fixed == NO) in MCMC_PHYREX_Disk_Multi()
9404 assert(target_disk->age_fixed == NO); in MCMC_PHYREX_Indel_Hit_Serial()
9578 if(!disk->ldsk && disk->age_fixed == NO) n_valid_disks++; in MCMC_PHYREX_Indel_Disk_Serial()
9624 if(!disk->ldsk && disk->age_fixed == NO) in MCMC_PHYREX_Indel_Disk_Serial()
9727 disk->age_fixed == NO && in MCMC_PHYREX_Add_Remove_Jump()
H A Dutilities.h2003 short int age_fixed; // time is fixed for disks corresponding to samples. member
H A Dinit.c3455 t->age_fixed = NO; in PHYREX_Init_Disk_Event()