| /dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
| H A D | enscoordsystem.c | 1685 statement = ajFmtStr( in coordsystemadaptorCacheInit()
2061 mapkey = ajFmtStr("%S|%S", cs1key, cs2key); in coordsystemadaptorMappingpathInit()
2241 statement = ajFmtStr( in coordsystemadaptorSeqregionMapInit()
3167 cs1key = ajFmtStr("%S:%S", cs1->Name, cs1->Version); in ensCoordsystemadaptorGetMappingpath()
3168 cs2key = ajFmtStr("%S:%S", cs2->Name, cs2->Version); in ensCoordsystemadaptorGetMappingpath()
3172 mapkey = ajFmtStr("%S|%S", cs1key, cs2key); in ensCoordsystemadaptorGetMappingpath()
3189 mapkey = ajFmtStr("%S|%S", cs2key, cs1key); in ensCoordsystemadaptorGetMappingpath()
3265 mapkey = ajFmtStr("%S|%S", cs1key, cs2key); in ensCoordsystemadaptorGetMappingpath()
3290 ajFmtStr("%S:%S", cs1->Name, cs1->Version) : in ensCoordsystemadaptorGetMappingpath()
3298 ajFmtStr("%S:%S", cs2->Name, cs2->Version) : in ensCoordsystemadaptorGetMappingpath()
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| H A D | ensgvindividual.c | 2127 constraint = ajFmtStr( in ensGvindividualadaptorFetchAllbyDisplay()
2199 statement = ajFmtStr( in ensGvindividualadaptorFetchAllbyGvpopulation()
2291 constraint = ajFmtStr("sample.name = '%s'", txtname); in ensGvindividualadaptorFetchAllbyName()
2365 constraint = ajFmtStr( in ensGvindividualadaptorFetchAllbyParent()
2384 constraint = ajFmtStr( in ensGvindividualadaptorFetchAllbyParent()
2405 constraint = ajFmtStr( in ensGvindividualadaptorFetchAllbyParent()
2423 constraint = ajFmtStr( in ensGvindividualadaptorFetchAllbyParent()
2508 statement = ajFmtStr( in ensGvindividualadaptorFetchAllbySynonym()
2546 statement = ajFmtStr( in ensGvindividualadaptorFetchAllbySynonym()
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| H A D | ensdatabaseentry.c | 5310 constraint = ajFmtStr( in ensDatabaseentryadaptorFetchAllDependents()
5373 constraint = ajFmtStr( in ensDatabaseentryadaptorFetchAllDependentsByGene()
5437 constraint = ajFmtStr( in ensDatabaseentryadaptorFetchAllDependentsByTranscript()
5817 statement = ajFmtStr( in ensDatabaseentryadaptorFetchAllbyDescription()
5960 statement = ajFmtStr( in ensDatabaseentryadaptorFetchAllbyName()
6102 statement = ajFmtStr( in ensDatabaseentryadaptorFetchAllbyObject()
6233 statement = ajFmtStr( in ensDatabaseentryadaptorFetchAllbySource()
6436 statement = ajFmtStr( in ensDatabaseentryadaptorFetchByAccession()
6566 statement = ajFmtStr( in ensDatabaseentryadaptorFetchByIdentifier()
6923 statement = ajFmtStr( in databaseentryadaptorRetrieveAllIdentifiersByExternalname()
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| H A D | ensqcsubmission.c | 1676 constraint = ajFmtStr("submission.analysis_id = %u " in ensQcsubmissionadaptorFetchAllbyQcdatabasePair()
1740 constraint = ajFmtStr("submission.query_db_id = %u", in ensQcsubmissionadaptorFetchAllbyQcdatabaseQuery()
1803 constraint = ajFmtStr("submission.target_db_id = %u", in ensQcsubmissionadaptorFetchAllbyQcdatabaseTarget()
1886 constraint = ajFmtStr("submission.analysis_id = %u " in ensQcsubmissionadaptorFetchAllbyRegion()
2027 statement = ajFmtStr( in ensQcsubmissionadaptorDelete()
2090 statement = ajFmtStr( in ensQcsubmissionadaptorStore()
2170 statement = ajFmtStr( in ensQcsubmissionadaptorUpdate()
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| H A D | ensgvpopulation.c | 1666 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllTagged()
1747 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllTags()
1882 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllbyGvindividual()
2007 statement = ajFmtStr(template, csv); in ensGvpopulationadaptorFetchAllbyGvindividuals()
2085 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllbyGvpopulationSub()
2172 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllbyGvpopulationSuper()
2363 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllbySynonym()
2391 statement = ajFmtStr( in ensGvpopulationadaptorFetchAllbySynonym()
2562 constraint = ajFmtStr("sample.name = '%s'", txtname); in ensGvpopulationadaptorFetchByName()
4513 constraint = ajFmtStr("population_genotype.sample_id = %u AND %S", in ensGvpopulationgenotypeadaptorFetchAllbyGvpopulation()
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| H A D | ensgvsample.c | 1383 constraint = ajFmtStr( in ensGvsampleadaptorFetchAllbyDisplay()
1566 statement = ajFmtStr( in ensGvsampleadaptorRetrieveAllIdentifiersBySynonym()
1584 statement = ajFmtStr( in ensGvsampleadaptorRetrieveAllIdentifiersBySynonym()
1677 statement = ajFmtStr( in ensGvsampleadaptorRetrieveAllSynonymsByIdentifier()
1695 statement = ajFmtStr( in ensGvsampleadaptorRetrieveAllSynonymsByIdentifier()
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| H A D | ensqcdasfeature.c | 2167 constraint = ajFmtStr("das_feature.alignment_id = %u", in ensQcdasfeatureadaptorFetchAllbyQcalignment()
2227 constraint = ajFmtStr("das_feature.feature_id = %u", in ensQcdasfeatureadaptorFetchAllbyQcsequenceFeature()
2298 constraint = ajFmtStr("das_feature.analysis_id = %u " in ensQcdasfeatureadaptorFetchAllbyQcsequencePair()
2364 constraint = ajFmtStr("das_feature.segment_id = %u", in ensQcdasfeatureadaptorFetchAllbyQcsequenceSegment()
2435 constraint = ajFmtStr( in ensQcdasfeatureadaptorFetchAllbyRegion()
2569 statement = ajFmtStr( in ensQcdasfeatureadaptorDelete()
2633 statement = ajFmtStr( in ensQcdasfeatureadaptorStore()
2720 statement = ajFmtStr( in ensQcdasfeatureadaptorUpdate()
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| H A D | ensseqregion.c | 1938 key = ajFmtStr("%u:%S", in seqregionadaptorCacheDelete()
2443 key = ajFmtStr("%u:%S", in ensSeqregionadaptorCacheInsert()
2780 statement = ajFmtStr( in ensSeqregionadaptorFetchAllbyAttributecodevalue()
2863 statement = ajFmtStr( in ensSeqregionadaptorFetchAllbyCoordsystem()
2887 statement = ajFmtStr( in ensSeqregionadaptorFetchAllbyCoordsystem()
2965 statement = ajFmtStr( in ensSeqregionadaptorFetchByIdentifier()
3113 statement = ajFmtStr( in ensSeqregionadaptorFetchByName()
3134 statement = ajFmtStr( in ensSeqregionadaptorFetchByName()
3285 statement = ajFmtStr( in ensSeqregionadaptorFetchByNamefuzzy()
3306 statement = ajFmtStr( in ensSeqregionadaptorFetchByNamefuzzy()
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| H A D | ensqcalignment.c | 3034 location = ajFmtStr("%S:%d-%d", in ensQcalignmentReport()
3125 location = ajFmtStr("%S:%d-%d", in ensQcalignmentReport()
3672 constraint = ajFmtStr("alignment.coverage >= %u " in ensQcalignmentadaptorFetchAllbyCoverage()
3768 constraint = ajFmtStr( in ensQcalignmentadaptorFetchAllbyLocationTarget()
3800 constraint = ajFmtStr( in ensQcalignmentadaptorFetchAllbyLocationTarget()
3885 constraint = ajFmtStr("alignment.analysis_id = %u " in ensQcalignmentadaptorFetchAllbyQcdatabasePair()
3948 constraint = ajFmtStr("alignment.query_db_id = %u", in ensQcalignmentadaptorFetchAllbyQcdatabaseQuery()
4010 constraint = ajFmtStr("alignment.target_db_id = %u", in ensQcalignmentadaptorFetchAllbyQcdatabaseTarget()
4125 statement = ajFmtStr( in ensQcalignmentadaptorDelete()
4193 statement = ajFmtStr( in ensQcalignmentadaptorStore()
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| H A D | ensattribute.c | 859 statement = ajFmtStr( in ensAttributeadaptorFetchAllbyGene()
936 statement = ajFmtStr( in ensAttributeadaptorFetchAllbyOperon()
1013 statement = ajFmtStr( in ensAttributeadaptorFetchAllbyOperontranscript()
1090 statement = ajFmtStr( in ensAttributeadaptorFetchAllbySeqregion()
1225 statement = ajFmtStr( in ensAttributeadaptorFetchAllbyTranscript()
1302 statement = ajFmtStr( in ensAttributeadaptorFetchAllbyTranslation()
2825 constraint = ajFmtStr("attrib_type.code = '%s'", txtcode); in ensAttributetypeadaptorFetchByCode()
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| H A D | ensalign.c | 3114 constraint = ajFmtStr("dna_align_feature.hit_name = '%s'", txthitname); in ensDnaalignfeatureadaptorFetchAllbyHitname()
3186 constraint = ajFmtStr("dna_align_feature.hit_name LIKE '%S.%%'", in ensDnaalignfeatureadaptorFetchAllbyHitunversioned()
3253 constraint = ajFmtStr("dna_align_feature.hcoverage > %f", coverage); in ensDnaalignfeatureadaptorFetchAllbySlicecoverage()
3319 constraint = ajFmtStr("external_db.db_name = %s", txtname); in ensDnaalignfeatureadaptorFetchAllbySliceexternaldatabasename()
3377 constraint = ajFmtStr("dna_align_feature.perc_ident > %f", identity); in ensDnaalignfeatureadaptorFetchAllbySliceidentity()
4114 constraint = ajFmtStr( in ensProteinalignfeatureadaptorFetchAllbyHitunversioned()
4182 constraint = ajFmtStr( in ensProteinalignfeatureadaptorFetchAllbySlicecoverage()
4250 constraint = ajFmtStr("external_db.db_name = %s", txtname); in ensProteinalignfeatureadaptorFetchAllbySliceexternaldatabasename()
4308 constraint = ajFmtStr( in ensProteinalignfeatureadaptorFetchAllbySliceidentity()
4589 statement = ajFmtStr( in ensSupportingfeatureadaptorFetchAllbyExon()
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| H A D | ensqcsequence.c | 1673 version = ajFmtStr("%d", qcs->Version); in ensQcsequenceFetchUrlExternal()
2261 constraint = ajFmtStr("sequence.sequence_db_id = %u", in ensQcsequenceadaptorFetchAllbyQcdatabase()
2334 constraint = ajFmtStr("sequence.sequence_db_id = %u " in ensQcsequenceadaptorFetchByAccession()
2470 constraint = ajFmtStr("sequence.sequence_db_id = %u " in ensQcsequenceadaptorFetchByName()
2581 statement = ajFmtStr("DELETE FROM " in ensQcsequenceadaptorDelete()
2654 statement = ajFmtStr("INSERT IGNORE INTO " in ensQcsequenceadaptorStore()
2752 statement = ajFmtStr("UPDATE IGNORE " in ensQcsequenceadaptorUpdate()
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| H A D | ensqcvariation.c | 2388 constraint = ajFmtStr("variation.alignment_id = %u", in ensQcvariationadaptorFetchAllbyQcalignment()
2455 constraint = ajFmtStr("variation.analysis_id = %u " in ensQcvariationadaptorFetchAllbyQcdatabasePair()
2519 constraint = ajFmtStr("variation.query_db_id = %u", in ensQcvariationadaptorFetchAllbyQcdatabaseQuery()
2583 constraint = ajFmtStr("variation.target_db_id = %u", in ensQcvariationadaptorFetchAllbyQcdatabaseTarget()
2699 statement = ajFmtStr( in ensQcvariationadaptorDelete()
2768 statement = ajFmtStr( in ensQcvariationadaptorStore()
2869 statement = ajFmtStr( in ensQcvariationadaptorUpdate()
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| H A D | ensgvvariation.c | 4923 statement = ajFmtStr( in ensGvvariationadaptorFetchAllbyGvvariationset()
6086 statement = ajFmtStr( in ensGvvariationadaptorFetchBySynonym()
6238 statement = ajFmtStr( in gvvariationadaptorRetrieveAllFaileddescriptions()
6548 statement = ajFmtStr( in ensGvvariationadaptorRetrieveFlank()
9273 statement = ajFmtStr( in ensGvvariationfeatureadaptorFetchAllbyFrequency()
9402 statement = ajFmtStr( in ensGvvariationfeatureadaptorFetchAllbyGvpopulation()
9630 statement = ajFmtStr( in ensGvvariationfeatureadaptorFetchAllbySliceAnnotated()
11382 statement = ajFmtStr( in ensGvvariationsetadaptorFetchAllbyGvvariation()
11521 statement = ajFmtStr( in ensGvvariationsetadaptorFetchAllbySub()
11689 statement = ajFmtStr( in ensGvvariationsetadaptorFetchAllbySuper()
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| H A D | ensgene.c | 4822 constraint = ajFmtStr( in ensGeneadaptorFetchAllbyBiotype()
4889 constraint = ajFmtStr( in ensGeneadaptorFetchAllbyDisplaylabel()
5269 statement = ajFmtStr( in ensGeneadaptorFetchAllbySlice()
5516 constraint = ajFmtStr( in ensGeneadaptorFetchByDisplaylabel()
5626 statement = ajFmtStr( in ensGeneadaptorFetchByExonidentifier()
5730 statement = ajFmtStr( in ensGeneadaptorFetchByExonstableidentifier()
5897 constraint = ajFmtStr( in ensGeneadaptorFetchByStableidentifier()
5986 statement = ajFmtStr( in ensGeneadaptorFetchByTranscriptidentifier()
6082 statement = ajFmtStr( in ensGeneadaptorFetchByTranscriptstableidentifier()
6182 statement = ajFmtStr( in ensGeneadaptorFetchByTranslationstableidentifier()
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| H A D | enssequence.c | 634 name = ajFmtStr( in ensSequenceadaptorFetchSeqregionSubSeq()
778 key = ajFmtStr("%u:%u", ensSeqregionGetIdentifier(sr), i); in ensSequenceadaptorFetchSeqregionSubStr()
796 statement = ajFmtStr( in ensSequenceadaptorFetchSeqregionSubStr()
864 statement = ajFmtStr( in ensSequenceadaptorFetchSeqregionSubStr()
1053 name = ajFmtStr( in ensSequenceadaptorFetchSliceSubSeq()
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| H A D | ensontology.c | 1124 key = ajFmtStr("%S:%S", (*Pontology)->Name, (*Pontology)->Space); in ontologyadaptorCacheInsert()
1216 key = ajFmtStr("%S:%S", ontology->Name, ontology->Space); in ontologyadaptorCacheRemove()
1676 key = ajFmtStr("%S:%S", name, space); in ensOntologyadaptorFetchByName()
1695 constraint = ajFmtStr("ontology.name = '%s' AND ontology.namespace = '%s'", in ensOntologyadaptorFetchByName()
3644 statement = ajFmtStr( in ensOntologytermadaptorFetchAllbyAncestor()
3830 statement = ajFmtStr( in ensOntologytermadaptorFetchAllbyChild()
4018 statement = ajFmtStr( in ensOntologytermadaptorFetchAllbyDescendant()
4302 statement = ajFmtStr( in ensOntologytermadaptorFetchAllbyParent()
4457 statement = ajFmtStr( in ensOntologytermadaptorFetchByAccession()
4603 statement = ajFmtStr( in ensOntologytermadaptorRetrieveAllOntologysynonyms()
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| H A D | ensgvallele.c | 1813 constraint = ajFmtStr("allele.variation_id = %u", in ensGvalleleadaptorFetchAllbyGvvariation()
1901 constraint = ajFmtStr("allele.subsnp_id = %u", subidentifier); in ensGvalleleadaptorFetchAllbySubidentifier()
2001 statement = ajFmtStr( in ensGvalleleadaptorRetrieveAllFaileddescriptions()
2085 statement = ajFmtStr( in ensGvalleleadaptorRetrieveSubhandle()
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| H A D | ensoperon.c | 2393 constraint = ajFmtStr("operon.display_label = '%s'", txtlabel); in ensOperonadaptorFetchByDisplaylabel()
2470 statement = ajFmtStr( in ensOperonadaptorFetchByOperontranscriptidentifier()
2567 statement = ajFmtStr( in ensOperonadaptorFetchByOperontranscriptstableidentifier()
2669 constraint = ajFmtStr( in ensOperonadaptorFetchByStableidentifier()
2676 constraint = ajFmtStr( in ensOperonadaptorFetchByStableidentifier()
5088 statement = ajFmtStr( in ensOperontranscriptadaptorFetchAllbyGene()
5155 constraint = ajFmtStr("operon_transcript.operon_id = %u", in ensOperontranscriptadaptorFetchAllbyOperon()
5224 constraint = ajFmtStr("operon_transcript.display_label = '%s'", txtlabel); in ensOperontranscriptadaptorFetchByDisplaylabel()
5343 constraint = ajFmtStr( in ensOperontranscriptadaptorFetchByStableidentifier()
5350 constraint = ajFmtStr( in ensOperontranscriptadaptorFetchByStableidentifier()
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| H A D | ensqcdatabase.c | 2250 key = ajFmtStr("%S:%S", (*Pqcdb)->Name, (*Pqcdb)->Release); in qcdatabaseadaptorCacheInsert()
2914 key = ajFmtStr("%S:%S", name, release); in ensQcdatabaseadaptorFetchByName()
2934 constraint = ajFmtStr("sequence_db.name = '%s' " in ensQcdatabaseadaptorFetchByName()
3046 statement = ajFmtStr( in ensQcdatabaseadaptorDelete()
3130 statement = ajFmtStr( in ensQcdatabaseadaptorStore()
3252 statement = ajFmtStr( in ensQcdatabaseadaptorUpdate()
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| H A D | ensditag.c | 1464 constraint = ajFmtStr("ditag.name = '%s'", txtname); in ensDitagadaptorFetchAllbyName()
1526 constraint = ajFmtStr("ditag.type = '%s'", txttype); in ensDitagadaptorFetchAllbyType()
3748 constraint = ajFmtStr("ditag_feature.ditag_id = %u", dt->Identifier); in ensDitagfeatureadaptorFetchAllbyDitag()
3815 constraint = ajFmtStr("ditag.type = '%s'", txttype); in ensDitagfeatureadaptorFetchAllbySlice()
3885 constraint = ajFmtStr("ditag.type = '%s'", txttype); in ensDitagfeatureadaptorFetchAllbyType()
3967 constraint = ajFmtStr("ditag.type = '%s'", txttype); in ensDitagFeatureadaptorFetchPairsBySlice()
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| H A D | ensrepeat.c | 1498 constraint = ajFmtStr( in ensRepeatconsensusadaptorFetchAllbyClassconsensus()
1640 constraint = ajFmtStr("repeat_consensus.repeat_name = '%s'", txtname); in ensRepeatconsensusadaptorFetchByName()
3657 constraint = ajFmtStr("repeat_consensus.repeat_type = '%s'", in ensRepeatfeatureadaptorFetchAllbySlice()
3672 constraint = ajFmtStr("repeat_consensus.repeat_class = '%s'", in ensRepeatfeatureadaptorFetchAllbySlice()
3687 constraint = ajFmtStr("repeat_consensus.repeat_name = '%s'", in ensRepeatfeatureadaptorFetchAllbySlice()
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| H A D | ensmarker.c | 1018 statement = ajFmtStr( in ensMarkersynonymadaptorFetchAllbyMarkeridentifier()
1083 statement = ajFmtStr( in ensMarkersynonymadaptorFetchByIdentifier()
2021 statement = ajFmtStr( in ensMarkermaplocationadaptorFetchAllbyMarkeridentifier()
4059 statement = ajFmtStr( in ensMarkeradaptorFetchAllbySynonym()
5762 constraint = ajFmtStr("marker.marker_id = %u", marker->Identifier); in ensMarkerfeatureadaptorFetchAllbyMarker()
5823 constraint = ajFmtStr("marker.priority > %d", priority); in ensMarkerfeatureadaptorFetchAllbySlice()
5832 constraint = ajFmtStr("marker_feature.map_weight < %u", mapweight); in ensMarkerfeatureadaptorFetchAllbySlice()
5897 constraint = ajFmtStr("marker_synonym.name = '%s'", txtname); in ensMarkerfeatureadaptorFetchAllbySlicemarkername()
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| /dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
| H A D | embshow.c | 1561 ajFmtStr(" %d", in showFillSeq()
1566 ajFmtStr(" %d", in showFillSeq()
1571 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillSeq()
1580 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillSeq()
1584 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillSeq()
1680 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillTicks()
1803 ajFmtStr(" %d", in showFillComp()
2344 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillREupright()
2869 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillREflat()
3137 ajListstrPushAppend(lines, ajFmtStr("\n")); in showFillFT()
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajfmt.h | 119 AjPStr ajFmtStr(const char *fmt, ...);
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