Searched refs:ajSeqNewSeq (Results 1 – 16 of 16) sorted by relevance
379 shuffled = ajSeqNewSeq(seq); in embEstShuffleSeq()938 gdup = ajSeqNewSeq(genome); in embEstAlignNonRecursive()939 edup = ajSeqNewSeq(est); in embEstAlignNonRecursive()1463 genome_subseq = ajSeqNewSeq(genome); in embEstAlignLinearSpace()1464 est_subseq = ajSeqNewSeq(est); in embEstAlignLinearSpace()1621 left_genome = ajSeqNewSeq(genome); in estAlignRecursive()1622 right_genome = ajSeqNewSeq(genome); in estAlignRecursive()1640 left_est = ajSeqNewSeq(est); in estAlignRecursive()1641 right_est = ajSeqNewSeq(est); in estAlignRecursive()1835 gdup = ajSeqNewSeq(genome); in estAlignMidpt()[all …]
301 revseq = ajSeqNewSeq(seq); in embPatternRegexSearch()434 revseq = ajSeqNewSeq(seq); in embPatternRegexSearchAll()571 revseq = ajSeqNewSeq(seq); in embPatternSeqSearch()717 revseq = ajSeqNewSeq(seq); in embPatternSeqSearchAll()
111 ret->Seq = ajSeqNewSeq(seq); in embDmxNrseqNew()
1885 seq = ajSeqNewSeq(thys->seq); in showFillTran()
89 uniseq = ajSeqNewSeq(seq); in main()143 prev_seq = ajSeqNewSeq(seq); in main()
53 uniseq = ajSeqNewSeq(seq); in main()
63 newseq = ajSeqNewSeq(seq); in main()
266 shuffled_est = ajSeqNewSeq(est); in main()311 reversed_est = ajSeqNewSeq(est); in main()
99 saveseq = ajSeqNewSeq(sequence); in main()
860 seqcp = ajSeqNewSeq(sequence); in vectorstrip_print_sequence()934 seqcp = ajSeqNewSeq(sequence); in vectorstrip_write_sequence()
350 seq = ajSeqNewSeq(seq1); in megamerger_Merge()
334 AjPSeq ajSeqNewSeq(const AjPSeq seq);
637 AjPSeq ajSeqNewSeq(const AjPSeq seq) in ajSeqNewSeq() function6154 ret[i] = ajSeqNewSeq(seq->Seq[i]); in ajSeqsetGetSeqarray()11716 return ajSeqNewSeq(seq); in ajSeqNewS()
752 seq = ajSeqNewSeq(alignSeq(thys, iseq, iali)); in alignWriteSeqformat()4478 thys->RealSeq[iseq] = ajSeqNewSeq(seq); in alignDataSetSequence()
1265 listseq = ajSeqNewSeq(seq); in seqWriteListAppend()
2654 thys->Seq[iseq] = ajSeqNewSeq(seq); in ajSeqsetApp()