/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
H A D | ajfiledata.c | 203 ajStrAppendS(&filedataHomeTmp,filedataBaseTmp); in ajDatafileNewInNameS() 328 ajStrAppendS(&filedataBaseTmp, name); in ajDatafileNewInNamePathS() 417 ajStrAppendS(&filedataNameDataTmp,path); in ajDatafileNewInNamePathS() 421 ajStrAppendS(&filedataNameDataTmp,name); in ajDatafileNewInNamePathS() 446 ajStrAppendS(&filedataNameDataTmp,path); in ajDatafileNewInNamePathS() 450 ajStrAppendS(&filedataNameDataTmp,name); in ajDatafileNewInNamePathS() 471 ajStrAppendS(&filedataNameDataTmp,path); in ajDatafileNewInNamePathS() 475 ajStrAppendS(&filedataNameDataTmp,name); in ajDatafileNewInNamePathS() 524 ajStrAppendS(&filedataNameDataTmp,name); in ajDatafileNewOutNameS() 548 ajStrAppendS(&filedataNameDataTmp,name); in ajDatafileNewOutNameS() [all …]
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H A D | ajseqtype.c | 1551 ajStrAppendS(®str, tmpstr); in seqTypeCharAny() 1587 ajStrAppendS(®str, tmpstr); in seqTypeCharAnyGap() 1590 ajStrAppendS(®str, tmpstr); in seqTypeCharAnyGap() 1627 ajStrAppendS(®str, tmpstr); in seqTypeCharNuc() 1663 ajStrAppendS(®str, tmpstr); in seqTypeCharNucGap() 1666 ajStrAppendS(®str, tmpstr); in seqTypeCharNucGap() 1704 ajStrAppendS(®str, tmpstr); in seqTypeCharNucGapPhylo() 1743 ajStrAppendS(®str, tmpstr); in seqTypeCharNucPure() 1781 ajStrAppendS(®str, tmpstr); in seqTypeCharProt() 1819 ajStrAppendS(®str, tmpstr); in seqTypeCharProtGap() [all …]
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H A D | ajvarwrite.c | 758 ajStrAppendS(&str, vardata->Id); in varoutWriteBcf() 760 ajStrAppendS(&str, vardata->Ref); in varoutWriteBcf() 762 ajStrAppendS(&str,vardata->Alt); in varoutWriteBcf() 764 ajStrAppendS(&str,vardata->Filter); in varoutWriteBcf() 766 ajStrAppendS(&str,vardata->Info); in varoutWriteBcf() 768 ajStrAppendS(&str,vardata->Format); in varoutWriteBcf() 1041 ajStrAppendS(&str, vardata->Id); in varoutWriteNextBcf() 1043 ajStrAppendS(&str, vardata->Ref); in varoutWriteNextBcf() 1045 ajStrAppendS(&str,vardata->Alt); in varoutWriteNextBcf() 1047 ajStrAppendS(&str,vardata->Filter); in varoutWriteNextBcf() [all …]
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H A D | ajnam.c | 1845 ajStrAppendS(methods, attrval); in ajNamSvrDetails() 1858 ajStrAppendS(methods, attrval); in ajNamSvrDetails() 1875 ajStrAppendS(methods, attrval); in ajNamSvrDetails() 1889 ajStrAppendS(methods, attrval); in ajNamSvrDetails() 2570 ajStrAppendS(methods, attrval); in ajNamDbDetails() 2583 ajStrAppendS(methods, attrval); in ajNamDbDetails() 2600 ajStrAppendS(methods, attrval); in ajNamDbDetails() 2614 ajStrAppendS(methods, attrval); in ajNamDbDetails() 3898 ajStrAppendS(&value,curword); in namListParse() 5462 ajStrAppendS(&value,curword); in namSvrCacheParseList() [all …]
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H A D | ajtranslate.c | 301 ajStrAppendS(&trnFileName, value); in ajTrnNewI() 454 ajStrAppendS(&trnText, trnLine); in ajTrnReadFile() 665 ajStrAppendS(&name, value); in ajTrnNewPep() 879 ajStrAppendS(pep, transtr); in ajTrnSeqC() 946 ajStrAppendS(pep, transtr); in ajTrnSeqInitC() 1002 ajStrAppendS(pep, transtr); in ajTrnSeqRevC() 1076 ajStrAppendS(pep, transtr); in ajTrnSeqRevinitC()
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H A D | ajpat.c | 803 ajStrAppendS (&pat,line); in ajPatlistSeqRead() 840 ajStrAppendS (&pat,line); in ajPatlistSeqRead() 941 ajStrAppendS (&pat,line); in ajPatlistRegexRead() 980 ajStrAppendS (&pat,line); in ajPatlistRegexRead()
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | emma.c | 240 ajStrAppendS(&cmd, tmpFilename); in main() 278 ajStrAppendS(&cmd, tmp); in main() 308 ajStrAppendS(&cmd, pwmstr); in main() 313 ajStrAppendS(&cmd, pwdstr); in main() 354 ajStrAppendS(&cmd, m1str); in main() 359 ajStrAppendS(&cmd, m2str); in main() 365 ajStrAppendS(&cmd, tmp); in main() 368 ajStrAppendS(&cmd, tmp); in main() 371 ajStrAppendS(&cmd, tmp); in main() 373 ajStrAppendS(&cmd, hgapres); in main() [all …]
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H A D | cutgextract.c | 374 ajStrAppendS(&cutgextractOrg, token); in cutgextract_next() 386 ajStrAppendS(pdoc, token); in cutgextract_next() 391 ajStrAppendS(pdoc, token); in cutgextract_next() 396 ajStrAppendS(pdoc, token); in cutgextract_next() 401 ajStrAppendS(pdoc, token); in cutgextract_next() 406 ajStrAppendS(pdoc, token); in cutgextract_next() 412 ajStrAppendS(pdoc, token); in cutgextract_next() 417 ajStrAppendS(pdoc, token); in cutgextract_next()
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H A D | extractfeat.c | 394 ajStrAppendS(&name, ajSeqGetNameS(seq)); in extractfeat_WriteOut() 398 ajStrAppendS(&name, value); in extractfeat_WriteOut() 401 ajStrAppendS(&name, value); in extractfeat_WriteOut() 407 ajStrAppendS(&name, type); in extractfeat_WriteOut() 415 ajStrAppendS(&desc, type); in extractfeat_WriteOut() 418 ajStrAppendS(&desc, describestr); in extractfeat_WriteOut() 420 ajStrAppendS(&desc, ajSeqGetDescS(seq)); in extractfeat_WriteOut() 672 ajStrAppendS(featstr, result); in extractfeat_GetRegionPad() 961 ajStrAppendS(strout, tagnam); in extractfeat_MatchPatternDescribe() 966 ajStrAppendS(strout, tagval); in extractfeat_MatchPatternDescribe()
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H A D | biosed.c | 155 ajStrAppendS(&str,tmp); in biosed_replace() 158 ajStrAppendS(&str,replace); in biosed_replace() 171 ajStrAppendS(&str,tmp); in biosed_replace() 174 ajStrAppendS(&str,replace); in biosed_replace()
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H A D | megamerger.c | 238 ajStrAppendS(&seqstr, tmp); in megamerger_Merge() 261 ajStrAppendS(&seqstr, tmp); in megamerger_Merge() 275 ajStrAppendS(&seqstr, tmp); in megamerger_Merge() 335 ajStrAppendS(&seqstr, tmp); in megamerger_Merge() 344 ajStrAppendS(&seqstr, tmp); in megamerger_Merge()
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H A D | splitsource.c | 166 ajStrAppendS(name_ptr, value); in splitsource_MakeSubSeqName() 169 ajStrAppendS(name_ptr, value); in splitsource_MakeSubSeqName() 172 ajStrAppendS(name_ptr, value); in splitsource_MakeSubSeqName() 230 ajStrAppendS(&desc, ajSeqGetDescS(seq)); in splitsource_ProcessChunk()
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H A D | descseq.c | 59 ajStrAppendS(&temp, name); in main() 67 ajStrAppendS(&temp, desc); in main()
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H A D | notab.c | 62 ajStrAppendS(&outline, tmpstr); in main() 72 ajStrAppendS(&outline, line); in main()
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H A D | getorf.c | 143 ajStrAppendS(&sseq, ajSeqGetSeqS(seq)); in main() 144 ajStrAppendS(&sseq, ajSeqGetSeqS(seq)); in main() 617 ajStrAppendS(&name, value); in getorf_WriteORF() 649 ajStrAppendS(&name, value); in getorf_WriteORF() 656 ajStrAppendS(&name, value); in getorf_WriteORF() 677 ajStrAppendS(&name, value); in getorf_WriteORF() 681 ajStrAppendS(&name, ajSeqGetDescS(seq)); in getorf_WriteORF()
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H A D | extractseq.c | 81 ajStrAppendS(&name, value); in main() 84 ajStrAppendS(&name, value); in main()
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H A D | origsplitter.c | 146 ajStrAppendS(&name, value); in origsplitter_write() 149 ajStrAppendS(&name, value); in origsplitter_write()
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H A D | makeprotseq.c | 183 ajStrAppendS(&seq,seqchar[idx]); in makeprotseq_random_sequence() 263 ajStrAppendS(&ch,tok); in makeprotseq_parse_pepstats()
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H A D | splitter.c | 174 ajStrAppendS(name_ptr, value); in splitter_MakeSubSeqName() 177 ajStrAppendS(name_ptr, value); in splitter_MakeSubSeqName()
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H A D | origunion.c | 58 ajStrAppendS(&unistr, ajSeqGetSeqS(seq)); in main()
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H A D | aligncopy.c | 59 ajStrAppendS(&header, comment); in main()
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H A D | tfm.c | 292 ajStrAppendS(path, program); in tfm_FindAppDoc() 349 ajStrAppendS(&newpath,path); in tfm_FixImages()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
H A D | enssequence.c | 786 ajStrAppendS(&tmpstr, chkstr); in ensSequenceadaptorFetchSeqregionSubStr() 834 ajStrAppendS(&tmpstr, chkstr); in ensSequenceadaptorFetchSeqregionSubStr() 1299 ajStrAppendS(Psequence, tmpstr); in ensSequenceadaptorFetchSliceSubStr() 1383 ajStrAppendS(Psequence, tmpstr); in ensSequenceadaptorFetchSliceSubStr() 1619 ajStrAppendS(Psequence, sequence1); in sequenceadaptorFetchCircularsliceSubStr() 1620 ajStrAppendS(Psequence, sequence2); in sequenceadaptorFetchCircularsliceSubStr() 1624 ajStrAppendS(Psequence, sequence2); in sequenceadaptorFetchCircularsliceSubStr() 1625 ajStrAppendS(Psequence, sequence1); in sequenceadaptorFetchCircularsliceSubStr() 1697 ajStrAppendS(Psequence, tmpstr); in sequenceadaptorFetchCircularsliceSubStr() 1781 ajStrAppendS(Psequence, tmpstr); in sequenceadaptorFetchCircularsliceSubStr()
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H A D | ensdatabaseconnection.c | 1441 ajStrAppendS(Purl, dbc->Socketfile); in ensDatabaseconnectionFetchUrl() 1451 ajStrAppendS(Purl, dbc->Username); in ensDatabaseconnectionFetchUrl() 1456 ajStrAppendS(Purl, dbc->Password); in ensDatabaseconnectionFetchUrl() 1462 ajStrAppendS(Purl, dbc->Hostname); in ensDatabaseconnectionFetchUrl() 1467 ajStrAppendS(Purl, dbc->Hostport); in ensDatabaseconnectionFetchUrl() 1473 ajStrAppendS(Purl, dbc->Databasename); in ensDatabaseconnectionFetchUrl()
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/dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
H A D | embgroup.c | 627 ajStrAppendS(&text, line); in grpParse() 696 ajStrAppendS(&ppnode->keywords, value); in grpParse() 874 ajStrAppendS(&text, line); in grpParseEmbassy() 1039 ajStrAppendS(&grpStr2, grpStr1); in grpParseValueRB() 1104 ajStrAppendS(keywords, keystr); in grpSplitList() 1233 ajStrAppendS(&head, sub[j]); in grpSubSplitList() 1251 ajStrAppendS(&revhead, sub[j]); in grpSubSplitList() 1267 ajStrAppendS(&tail, sub[j]); in grpSubSplitList() 1286 ajStrAppendS(&revtail, sub[j]); in grpSubSplitList() 2201 ajStrAppendS(&gname, keystr); in embGrpKeySearchProgs()
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