| /dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
| H A D | ajindex.h | 110 sizeof(ajulong) + sizeof(ajulong))
185 ajulong Left;
186 ajulong Right;
243 ajulong offset;
269 ajulong offset;
291 ajulong offset;
368 ajulong offset;
822 +sizeof(ajulong)+sizeof(ajulong))
1111 ajulong ajBtreeIdHash(const void *x, ajulong hashsize);
1114 ajulong ajBtreeHitHash(const void *x, ajulong hashsize);
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| H A D | ajtable.h | 156 ajulong (*Fhash)(const void* key, ajulong hashsize);
160 ajulong Size;
161 ajulong Length;
275 ajulong ajTablecharHash(const void* key, ajulong hashsize);
276 ajulong ajTablecharHashCase(const void* key, ajulong hashsize);
277 ajulong ajTableintHash(const void* key, ajulong hashsize);
278 ajulong ajTablelongHash(const void* key, ajulong hashsize);
279 ajulong ajTableuintHash(const void* key, ajulong hashsize);
280 ajulong ajTableulongHash(const void* key, ajulong hashsize);
281 ajulong ajTablestrHash(const void* key, ajulong hashsize);
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| H A D | ajtable.c | 99 static ajulong tableHashAtom(const void* key, ajulong hashsize);
515 ajulong newsize; in tableFreeSetExpand()
3307 static ajulong tableHashAtom(const void* key, ajulong hashsize) in tableHashAtom()
3631 ajulong ajTablecharHash(const void* key, ajulong hashsize) in ajTablecharHash()
3661 ajulong ajTablecharHashCase(const void* key, ajulong hashsize) in ajTablecharHashCase()
4022 ajulong ajTableintHash(const void* key, ajulong hashsize) in ajTableintHash()
4385 ajulong ajTablelongHash(const void* key, ajulong hashsize) in ajTablelongHash()
5051 ajulong ajTablestrHash(const void* key, ajulong hashsize) in ajTablestrHash()
5084 ajulong ajTablestrHashCase(const void* key, ajulong hashsize) in ajTablestrHashCase()
5620 ajulong ajTableuintHash(const void* key, ajulong hashsize) in ajTableuintHash()
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| H A D | ajindex.c | 273 static ajulong btreePageposCompress(ajulong oldpos,
563 ajulong **keys, ajulong **ptrs);
567 const ajulong *keys, const ajulong *ptrs,
605 ajulong key, ajulong less,
608 ajulong key, ajulong less,
14052 ajulong count, ajulong countall) in ajBtreeSeccacheNewC()
14279 ajulong count, ajulong countall) in ajBtreeSeccacheNewS()
21556 ajulong **keys, ajulong **ptrs) in btreeGetNumKeys()
21663 const ajulong *keys, const ajulong *ptrs, in btreeWriteNumNode()
23146 ajulong key, ajulong less, in btreeNumInsertNonfull()
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| H A D | ajarch.h | 130 typedef unsigned long ajulong; typedef
140 typedef unsigned long long ajulong; typedef
152 typedef unsigned long long ajulong; typedef
164 typedef unsigned long long ajulong; typedef
176 typedef unsigned long long ajulong; typedef
191 typedef unsigned long ajulong; typedef
203 typedef unsigned long long ajulong; typedef
215 typedef unsigned long long ajulong; typedef
227 typedef unsigned long long ajulong; typedef
237 typedef unsigned long long ajulong; typedef
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| H A D | ajsql.h | 175 ajulong AffectedRows;
176 ajulong SelectedRows;
237 ajulong Current;
302 ajulong ajSqlstatementGetAffectedrows(const AjPSqlstatement sqls);
304 ajulong ajSqlstatementGetSelectedrows(const AjPSqlstatement sqls);
337 ajulong *Plength);
347 AjBool ajSqlcolumnToUlong(AjPSqlrow sqlr, ajulong *Pvalue);
362 ajulong *Plength);
389 ajulong *Pvalue);
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| H A D | ajbamindex.h | 75 ajulong u;
76 ajulong v;
113 ajulong *offset;
134 ajulong n_no_coor;
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| H A D | ajlist.c | 691 ajulong i = 0UL; in ajListSort()
1034 ajulong newsize; in listFreeSetExpand()
1486 ajulong i = 0UL; in ajListToarray()
1487 ajulong n = 0UL; in ajListToarray()
1562 ajulong n = 0UL; in ajListToindex()
1563 ajulong s = 0UL; in ajListToindex()
1564 ajulong i = 0UL; in ajListToindex()
1739 ajulong i = 0UL; in ajListTrace()
2154 ajulong i = 0UL; in ajListExit()
3435 ajulong i = 0UL; in ajListstrToarray()
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| H A D | ajfmt.c | 390 ajulong m = 0; in cvt_d()
512 hval = (ajulong) va_arg(VA_V(ap), ajulong); in cvt_u()
577 ajulong hm = 0; in cvt_o()
592 hm = (ajulong) va_arg(VA_V(ap), ajulong); in cvt_o()
651 ajulong hm = 0; in cvt_x()
3336 hval = (ajulong *) va_arg(VA_V(ap), ajulong *); in scvt_x()
3615 hval = (ajulong *) va_arg(VA_V(ap), ajulong *); in scvt_o()
3723 hval = (ajulong *) va_arg(VA_V(ap), ajulong *); in scvt_u()
4210 v = (ajulong) 10 * v + (ajulong) d; in sc_ulong()
4246 v = (ajulong) 16 * v + (ajulong) d; in sc_hex()
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| H A D | ajbamindex.c | 108 ajulong curr_off;
141 ajulong end) in bamInsertOffset()
188 ajulong offset) in bamInsertOffset2()
245 ajulong n; in bamMergeChunks()
247 ajulong k =0UL; in bamMergeChunks()
567 ajulong l = 0; in bamIndexSave()
658 ajByteRevLen8u((ajulong*)&index2->offset[k]); in bamIndexSave()
663 ajByteRevLen8u((ajulong*)&index2->offset[k]); in bamIndexSave()
676 ajByteRevLen8u((ajulong*)&l); in bamIndexSave()
819 ajByteRevLen8u((ajulong*)&idx->n_no_coor); in bamIndexLoadCore()
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| H A D | ajmath.c | 49 static ajulong seqCrcTable[256];
573 register ajulong crc; in ajMathCrc32()
615 ajulong crc; in spcrc32gen()
616 ajulong poly; in spcrc32gen()
830 ajulong maxnum = ULONG_MAX/10; in ajNumLengthInt()
831 ajulong i; in ajNumLengthInt()
832 ajulong iabs; in ajNumLengthInt()
870 ajuint ajNumLengthUint(ajulong inumber) in ajNumLengthUint()
873 ajulong maxnum = ULONG_MAX/10; in ajNumLengthUint()
874 ajulong i; in ajNumLengthUint()
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| H A D | ajlist.h | 130 ajulong Count;
193 AjBool ajListPeekNumber(const AjPList thys, ajulong n, void** Pitem);
194 ajulong ajListGetLength(const AjPList list);
195 ajulong ajListstrGetMemsize(const AjPList list);
220 ajulong ajListstrGetLength(const AjPList list);
232 ajulong ajListstrToarray(const AjPList list, AjPStr** array);
233 ajulong ajListstrToarrayAppend(const AjPList list, AjPStr** array);
236 ajulong ajListToarray(const AjPList list, void*** array);
237 ajulong ajListToindex(const AjPList list, ajuint* listindex,
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| H A D | ajseqabi.c | 716 (((ajulong)buf[3]) + in seqABIReadInt4()
717 ((ajulong)buf[2]<<8) + in seqABIReadInt4()
718 ((ajulong)buf[1]<<16) + in seqABIReadInt4()
719 ((ajulong)buf[0]<<24)); in seqABIReadInt4()
747 ajulong res; in seqABIReadFloat4()
752 res = (ajulong) in seqABIReadFloat4()
753 (((ajulong)buf[3]) + in seqABIReadFloat4()
754 ((ajulong)buf[2]<<8) + in seqABIReadFloat4()
755 ((ajulong)buf[1]<<16) + in seqABIReadFloat4()
756 ((ajulong)buf[0]<<24)); in seqABIReadFloat4()
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
| H A D | compseq.c | 30 static void compseq_makebigarray(ajulong no_elements, ajulong **bigarray);
33 ajulong calcfreq_total);
37 ajulong calcfreq_total);
65 ajulong result; in main()
66 ajulong *bigarray; in main()
67 ajulong *calcfreq_array; in main()
68 ajulong no_elements; in main()
71 ajulong count; in main()
438 static void compseq_makebigarray(ajulong no_elements, ajulong **bigarray) in compseq_makebigarray()
584 const ajulong *calcfreq_array, ajulong calcfreq_total) in compseq_getexpfreqnuc()
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| H A D | dbxreport.c | 72 ajulong* refs;
99 ajulong freespace;
100 ajulong pagecount;
101 ajulong totsize;
155 ajulong pagecount; in main()
156 ajulong totsize; in main()
157 ajulong ipage; in main()
158 ajulong pageoffset = 0L; in main()
166 ajulong nfound; in main()
167 ajulong nfoundall; in main()
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| H A D | dbxfasta.c | 97 ajulong nentries = 0UL; in main()
98 ajulong ientries = 0UL; in main()
111 ajulong idpricache=0L, idpriread = 0L, idpriwrite = 0L, idprisize= 0L; in main()
112 ajulong idseccache=0L, idsecread = 0L, idsecwrite = 0L, idsecsize= 0L; in main()
113 ajulong acpricache=0L, acpriread = 0L, acpriwrite = 0L, acprisize= 0L; in main()
120 ajulong splitrootid =0l, splitrootnum=0L; in main()
121 ajulong splitrootkey=0L, splitrootsec=0L; in main()
122 ajulong splitleafid =0L, splitleafnum=0L; in main()
123 ajulong splitleafkey=0L, splitleafsec=0L; in main()
124 ajulong reorderid =0L, reordernum =0L; in main()
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| H A D | dbxflat.c | 129 ajulong nentries = 0UL; in main()
130 ajulong ientries = 0UL; in main()
138 ajulong idpricache=0L, idpriread = 0L, idpriwrite = 0L, idprisize= 0L; in main()
139 ajulong idseccache=0L, idsecread = 0L, idsecwrite = 0L, idsecsize= 0L; in main()
140 ajulong acpricache=0L, acpriread = 0L, acpriwrite = 0L, acprisize= 0L; in main()
151 ajulong splitrootid =0l, splitrootnum=0L; in main()
152 ajulong splitrootkey=0L, splitrootsec=0L; in main()
153 ajulong splitleafid =0L, splitleafnum=0L; in main()
154 ajulong splitleafkey=0L, splitleafsec=0L; in main()
155 ajulong reorderid =0L, reordernum =0L; in main()
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| H A D | union.c | 25 static ajulong union_GetOverlap (const AjPSeq first,
30 ajulong offset,
55 ajulong offset = 0; in main()
67 ajulong overlap_base_count = 0; in main()
186 static ajulong union_GetOverlap (const AjPSeq first_seq, in union_GetOverlap()
224 ajulong offset, in union_CopyFeatures()
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| H A D | dbxcompress.c | 52 ajulong pripagecount; in main()
53 ajulong secpagecount; in main()
59 ajulong count; in main()
60 ajulong countall; in main()
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| H A D | dbxuncompress.c | 52 ajulong pripagecount; in main()
53 ajulong secpagecount; in main()
59 ajulong count; in main()
60 ajulong countall; in main()
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| H A D | oddcomp.c | 59 ajulong no_elements = 0; in main()
62 ajulong count = 0; in main()
65 ajulong total = 0; in main()
66 ajulong other = 0; in main()
76 ajulong tul; in main()
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| H A D | dbxgcg.c | 177 ajulong nentries = 0L; in main()
178 ajulong ientries = 0L; in main()
183 ajulong idpricache=0L, idpriread = 0L, idpriwrite = 0L, idprisize= 0L; in main()
184 ajulong idseccache=0L, idsecread = 0L, idsecwrite = 0L, idsecsize= 0L; in main()
185 ajulong acpricache=0L, acpriread = 0L, acpriwrite = 0L, acprisize= 0L; in main()
186 ajulong acseccache=0L, acsecread = 0L, acsecwrite = 0L, acsecsize= 0L; in main()
187 ajulong svpricache=0L, svpriread = 0L, svpriwrite = 0L, svprisize= 0L; in main()
188 ajulong svseccache=0L, svsecread = 0L, svsecwrite = 0L, svsecsize= 0L; in main()
189 ajulong kwpricache=0L, kwpriread = 0L, kwpriwrite = 0L, kwprisize= 0L; in main()
190 ajulong kwseccache=0L, kwsecread = 0L, kwsecwrite = 0L, kwsecsize= 0L; in main()
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| /dports/biology/emboss/EMBOSS-6.6.0/nucleus/ |
| H A D | embnmer.c | 83 ajulong embNmerNuc2int(const char *seq, ajint wordsize, ajint offset, in embNmerNuc2int()
87 ajulong result = 0; in embNmerNuc2int()
137 ajint embNmerInt2nuc(AjPStr *seq, ajint wordsize, ajulong value) in embNmerInt2nuc()
178 ajulong embNmerProt2int(const char *seq, ajint wordsize, ajint offset, in embNmerProt2int()
182 ajulong result = 0; in embNmerProt2int()
264 ajint embNmerInt2prot(AjPStr *seq, ajint wordsize, ajulong value, in embNmerInt2prot()
319 AjBool embNmerGetNoElements(ajulong *no_elements, ajint word, in embNmerGetNoElements()
324 static ajulong maxlong = UINT_MAX; in embNmerGetNoElements()
351 *no_elements = (ajulong)result; in embNmerGetNoElements()
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| H A D | embnmer.h | 95 ajulong embNmerNuc2int (const char *seq, ajint wordsize, ajint offset,
98 ajulong value);
99 ajulong embNmerProt2int (const char *seq, ajint wordsize, ajint offset,
102 ajulong value, AjBool ignorebz);
103 AjBool embNmerGetNoElements (ajulong *no_elements,
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| H A D | embword.c | 86 static ajulong wordStrHash(const void *key, ajulong hashsize);
92 static ajulong wordRabinKarpConstant(ajuint m);
129 static ajulong wordStrHash(const void *key, ajulong hashsize) in wordStrHash()
131 ajulong hashval; in wordStrHash()
1612 static ajulong wordRabinKarpConstant(ajuint m) in wordRabinKarpConstant()
1614 ajulong rm; in wordRabinKarpConstant()
1687 ajulong patternHash; in embWordRabinKarpInit()
1816 ajulong rm; in embWordRabinKarpSearch()
1817 ajulong textHash = 0; in embWordRabinKarpSearch()
1831 textHash = (ajulong)(RK_RADIX * textHash + in embWordRabinKarpSearch()
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