| /dports/biology/bbmap/bbmap/current/clump/ |
| H A D | PivotSet.java | 218 ArrayList<HashThread> alht=new ArrayList<HashThread>(threads); in makeKcaStatic() local
219 for(int i=0; i<threads; i++){alht.add(new HashThread(cris, kc, kca, false));} in makeKcaStatic()
222 for(HashThread ht : alht){ht.start();} in makeKcaStatic()
226 for(HashThread ht : alht){ in makeKcaStatic()
248 ArrayList<HashThread> alht=new ArrayList<HashThread>(threads); in processInner() local
249 for(int i=0; i<threads; i++){alht.add(new HashThread(cris, kc, kca, ecco));} in processInner()
252 for(HashThread ht : alht){ht.start();} in processInner()
256 for(HashThread ht : alht){ in processInner()
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| H A D | KmerReduce.java | 275 ArrayList<HashThread> alht=new ArrayList<HashThread>(threads); in processInner() local
276 for(int i=0; i<threads; i++){alht.add(new HashThread(cris, ros, kc));} in processInner()
279 for(HashThread ht : alht){ht.start();} in processInner()
283 for(HashThread ht : alht){ in processInner()
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| H A D | KmerSplit.java | 343 ArrayList<HashThread> alht=new ArrayList<HashThread>(threads); in splitReads() local
344 for(int i=0; i<threads; i++){alht.add(new HashThread(i, cris, ros, kc));} in splitReads()
347 for(HashThread ht : alht){ht.start();} in splitReads()
352 for(HashThread ht : alht){ in splitReads()
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| H A D | KmerSort3.java | 675 ArrayList<FetchSubThread> alht=new ArrayList<FetchSubThread>(subthreads);
677 for(int i=0; i<subthreads; i++){alht.add(new FetchSubThread(i, cris, kc, unpair));}
680 for(FetchSubThread ht : alht){ht.start();}
684 for(FetchSubThread ht : alht){
710 FetchSubThread ht=alht.set(i, null);
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| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | SketchIndex.java | 43 ArrayList<IndexThread> alht=new ArrayList<IndexThread>(threads); in spawnIndexThreads() local
48 alht.add(new IndexThread(ai, totalKeys, uniqueKeys)); in spawnIndexThreads()
52 for(IndexThread pt : alht){ in spawnIndexThreads()
59 for(IndexThread pt : alht){ in spawnIndexThreads()
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| /dports/shells/zsh/zsh-5.8.1/Src/Modules/ |
| H A D | parameter.c | 1743 setaliases(HashTable alht, Param pm, HashTable ht, int flags) in setaliases() argument
1751 for (i = 0; i < alht->hsize; i++) in setaliases()
1752 for (hn = alht->nodes[i]; hn; hn = next) { in setaliases()
1761 (hd = alht->removenode(alht, hn->nam))) in setaliases()
1762 alht->freenode(hd); in setaliases()
1776 alht->addnode(alht, ztrdup(hn->nam), in setaliases()
1875 getalias(HashTable alht, UNUSED(HashTable ht), const char *name, int flags) in getalias() argument
1885 if ((al = (Alias) alht->getnode2(alht, name)) && in getalias()
1939 scanaliases(HashTable alht, UNUSED(HashTable ht), ScanFunc func, in scanaliases() argument
1949 for (i = 0; i < alht->hsize; i++) in scanaliases()
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| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | AccessionToTaxid_old.java | 279 ArrayList<HashThread> alht=new ArrayList<HashThread>(ffa.length); in spawnThreads() local
283 alht.add(new HashThread(ff)); in spawnThreads()
288 for(HashThread pt : alht){ in spawnThreads()
294 for(HashThread pt : alht){ in spawnThreads()
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| H A D | AccessionToTaxid.java | 295 ArrayList<HashThread> alht=new ArrayList<HashThread>(threads); in spawnThreads() local
299 alht.add(new HashThread(bf)); in spawnThreads()
303 for(HashThread pt : alht){ in spawnThreads()
309 for(HashThread pt : alht){ in spawnThreads()
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| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | DedupeProtein.java | 544 ArrayList<HashThread> alht=new ArrayList<HashThread>(THREADS); in processMatches() local
546 for(HashThread ht : alht){ht.start();} in processMatches()
547 for(HashThread ht : alht){ in processMatches()
566 alht.clear(); in processMatches()
604 ArrayList<HashThread> alht=new ArrayList<HashThread>(THREADS); in processContainments() local
607 for(HashThread ht : alht){ht.start();} in processContainments()
608 for(HashThread ht : alht){ in processContainments()
633 alht.clear(); in processContainments()
695 for(HashThread ht : alht){ht.start();} in findOverlaps()
696 for(HashThread ht : alht){ in findOverlaps()
[all …]
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| H A D | Dedupe.java | 577 ArrayList<HashThread> alht=new ArrayList<HashThread>(THREADS); in processMatches() local
579 for(HashThread ht : alht){ht.start();} in processMatches()
580 for(HashThread ht : alht){ in processMatches()
599 alht.clear(); in processMatches()
637 ArrayList<HashThread> alht=new ArrayList<HashThread>(THREADS); in processContainments() local
640 for(HashThread ht : alht){ht.start();} in processContainments()
641 for(HashThread ht : alht){ in processContainments()
666 alht.clear(); in processContainments()
728 for(HashThread ht : alht){ht.start();} in findOverlaps()
729 for(HashThread ht : alht){ in findOverlaps()
[all …]
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| H A D | Dedupe2.java | 541 ArrayList<HashThread> alht=new ArrayList<HashThread>(THREADS); in processMatches() local
543 for(HashThread ht : alht){ht.start();} in processMatches()
544 for(HashThread ht : alht){ in processMatches()
563 alht.clear(); in processMatches()
601 ArrayList<HashThread> alht=new ArrayList<HashThread>(THREADS); in processContainments() local
604 for(HashThread ht : alht){ht.start();} in processContainments()
605 for(HashThread ht : alht){ in processContainments()
630 alht.clear(); in processContainments()
692 for(HashThread ht : alht){ht.start();} in findOverlaps()
693 for(HashThread ht : alht){ in findOverlaps()
[all …]
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