Searched refs:aliScore (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/apps/pair_align/ |
| H A D | pair_align.cpp | 88 int aliScore = 0; in pairwise_align() local
91 if (method == 0) aliScore = globalAlignment(gAlign, sc, TAlignConfig(), NeedlemanWunsch()); in pairwise_align()
92 else if (method == 1) aliScore = globalAlignment(gAlign, sc, TAlignConfig(), Gotoh()); in pairwise_align()
93 else if (method == 2) aliScore = localAlignment(gAlign, sc, SmithWaterman()); in pairwise_align()
94 else if (method == 3) aliScore = globalAlignment(gAlign, Lcs()); in pairwise_align()
96 …if (method == 0) aliScore = globalAlignment(gAlign, sc, TAlignConfig(), low, high, BandedNeedleman… in pairwise_align()
97 …else if (method == 1) aliScore = globalAlignment(gAlign, sc, TAlignConfig(), low, high, BandedGoto… in pairwise_align()
101 std::cout << "Alignment score: " << aliScore << std::endl; in pairwise_align()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/pair_align/lib/ |
| H A D | pair_align_lib.h | 193 int aliScore = _alignHelper(gAlign, sc, TAlignConfig(), low, high, banded, method); in pairwise_align() local
196 std::cout << "Alignment score: " << aliScore << std::endl; in pairwise_align()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
| H A D | razers_spliced.h | 2752 double aliScore = mRtmp.mScore + mLtmp.mScore - 2* mLtmp.editDist - 2* mRtmp.editDist; in mapSplicedReads() local
2753 aliScore = (double)(aliScore*100)/readLength; in mapSplicedReads()
2754 mLtmp.pairScore = mRtmp.pairScore = (int)(identityScore+aliScore)/2.0; in mapSplicedReads()
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