| /dports/devel/corrade/corrade-2020.06/src/Corrade/Utility/Test/ |
| H A D | MacrosTest.cpp | 42 void alignAs();
57 addTests({&MacrosTest::alignAs, in MacrosTest()
72 void MacrosTest::alignAs() { in alignAs() function in Corrade::Utility::Test::__anon8f87a75a0411::MacrosTest
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| /dports/biology/jalview/jalview/src/jalview/gui/ |
| H A D | CrossRefAction.java | 128 xrefsAlignment.alignAs(alignment); in run()
444 copyAlignment.alignAs(alignment); in copyAlignmentForSplitFrame()
477 xrefsAlignment.alignAs(copyAlignment); in copyAlignmentForSplitFrame()
488 copyAlignment.alignAs(xrefsAlignment); in copyAlignmentForSplitFrame()
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| H A D | AlignViewport.java | 802 al.alignAs(thisAlignment); in openLinkedAlignment()
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| H A D | AlignFrame.java | 5597 cdna.alignAs(alignment); in viewAsCdna_actionPerformed()
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| /dports/biology/jalview/jalview/test/jalview/gui/ |
| H A D | SplitFrameTest.java | 180 copyComplement.alignAs(result); in testAlignAsSplitFrame()
200 newcomplement.alignAs(newresult); in testAlignAsSplitFrame()
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| /dports/biology/jalview/jalview/test/jalview/datamodel/ |
| H A D | AlignmentTest.java | 749 ((Alignment) al2).alignAs(al1, false, true); in testAlignAs_dnaAsDna()
772 ((Alignment) al2).alignAs(al1, false, true); in testAlignAs_proteinAsCdna()
796 ((Alignment) al1).alignAs(al2, false, true); in testAlignAs_cdnaAsProtein()
853 ((Alignment) al1).alignAs(al2, false, true); in verifyAlignAs()
921 ((Alignment) al1).alignAs(al2, false, false); in testAlignAs_dnaAsProtein_withIntrons()
933 ((Alignment) al1).alignAs(al2, true, true); in testAlignAs_dnaAsProtein_withIntrons()
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| /dports/biology/jalview/jalview/src/jalview/datamodel/ |
| H A D | AlignmentI.java | 561 int alignAs(AlignmentI al); in alignAs() method
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| H A D | Alignment.java | 1780 public int alignAs(AlignmentI al) in alignAs() method in Alignment
1786 return alignAs(al, false, true); in alignAs()
1812 public int alignAs(AlignmentI al, boolean preserveMappedGaps, in alignAs() method in Alignment
1827 return AlignmentUtils.alignAs(this, al); in alignAs()
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| /dports/biology/jalview/jalview/src/jalview/appletgui/ |
| H A D | CutAndPasteTransfer.java | 354 al.alignAs(thisAlignment); in openSplitFrame()
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| /dports/biology/jalview/jalview/src/jalview/ws/jws2/ |
| H A D | MsaWSThread.java | 988 complement.alignAs(al); in displayResults()
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| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | AlignmentUtils.java | 2435 public static int alignAs(AlignmentI unaligned, AlignmentI aligned) in alignAs() method in AlignmentUtils
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| /dports/biology/jalview/jalview/src/jalview/bin/ |
| H A D | JalviewLite.java | 1998 al2.alignAs(al1); in addToDisplay()
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| /dports/biology/jalview/jalview/test/jalview/analysis/ |
| H A D | AlignmentUtilsTests.java | 2017 AlignmentUtils.alignAs(cds, dna); in testAlignAs_alternateTranscriptsUngapped()
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