| /dports/biology/canu/canu-2.2/src/correction/ |
| H A D | falconConsensus-alignTag.C | 311 int32 alignEnd = (restrictToOverlap == true) ? evidence[j].placedEnd : evidence[0].readLength; in alignReadsToTemplate() local
313 assert(alignEnd > alignBgn); in alignReadsToTemplate()
322 alignEnd += expansion; in alignReadsToTemplate()
325 if (alignEnd > evidence[0].readLength) alignEnd = evidence[0].readLength; in alignReadsToTemplate()
328 evidence[0].read + alignBgn, alignEnd - alignBgn, in alignReadsToTemplate()
333 alignBgn, alignEnd, tolerance); in alignReadsToTemplate()
362 alignBgn, alignEnd, tolerance, tDif, 100.0 * maxDifference); in alignReadsToTemplate()
374 if ((alignEnd < evidence[0].readLength) && (tEnd >= alignEnd)) { in alignReadsToTemplate()
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 219 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
293 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 219 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
293 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 219 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
293 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 219 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
293 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 219 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
293 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 219 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
293 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 224 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
298 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/java.base/share/classes/java/util/zip/ |
| H A D | CRC32C.java | 224 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateBytes()
298 for (int alignEnd = off + alignLength; off < alignEnd; off++) { in updateDirectByteBuffer()
|
| /dports/biology/bamtools/bamtools-2.5.2/src/api/ |
| H A D | BamAlignment.cpp | 469 int alignEnd = Position; in GetEndPosition() local
485 alignEnd += op.Length; in GetEndPosition()
491 alignEnd += op.Length; in GetEndPosition()
503 alignEnd -= 1; in GetEndPosition()
507 return alignEnd; in GetEndPosition()
|
| /dports/databases/pgadmin3/pgadmin3-1.22.2/pgadmin/include/ogl/ |
| H A D | lines.h | 349 void SetAlignmentEnd(int alignEnd) in SetAlignmentEnd() argument
351 m_alignmentEnd = alignEnd; in SetAlignmentEnd()
|
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/ |
| H A D | bam.h | 716 …nst BAMFile *self, BAMFileSlice **rslt, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd);
739 … CC BAMFileSeek ( const BAMFile *self, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd );
|
| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/ |
| H A D | bam.h | 716 …nst BAMFile *self, BAMFileSlice **rslt, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd);
739 … CC BAMFileSeek ( const BAMFile *self, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd );
|
| /dports/www/mediawiki135/mediawiki-1.35.5/includes/specials/forms/ |
| H A D | UploadForm.php | 273 MediaWikiServices::getInstance()->getContentLanguage()->alignEnd() . '">' .
|
| /dports/www/mediawiki137/mediawiki-1.37.1/includes/specials/forms/ |
| H A D | UploadForm.php | 307 $this->contentLanguage->alignEnd() . '">' .
|
| /dports/www/mediawiki136/mediawiki-1.36.3/includes/specials/forms/ |
| H A D | UploadForm.php | 307 $this->contentLanguage->alignEnd() . '">' .
|
| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
| H A D | bam.c | 4323 unsigned const alignEnd) in makeSlice() argument
4325 BinList const bins = calcBinList(alignStart, alignEnd); in makeSlice()
4328 unsigned const endBin = ((alignEnd - 1) >> 14) + 1; in makeSlice()
4339 slice->sliceEnd = alignEnd; in makeSlice()
4352 slice->sliceEnd = alignEnd; in makeSlice()
4358 …onst BAMFile *self, BAMFileSlice **rslt, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd) in BAMFileMakeSlice() argument
4369 if (alignEnd > self->refSeq[refSeqId].length) in BAMFileMakeSlice()
4370 alignEnd = self->refSeq[refSeqId].length; in BAMFileMakeSlice()
4372 *rslt = makeSlice(self, refSeqId, alignStart, alignEnd); in BAMFileMakeSlice()
4408 …rc_t CC BAMFileSeek(const BAMFile *self, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd) in BAMFileSeek() argument
|
| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
| H A D | bam.c | 4323 unsigned const alignEnd) in makeSlice() argument
4325 BinList const bins = calcBinList(alignStart, alignEnd); in makeSlice()
4328 unsigned const endBin = ((alignEnd - 1) >> 14) + 1; in makeSlice()
4339 slice->sliceEnd = alignEnd; in makeSlice()
4352 slice->sliceEnd = alignEnd; in makeSlice()
4358 …onst BAMFile *self, BAMFileSlice **rslt, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd) in BAMFileMakeSlice() argument
4369 if (alignEnd > self->refSeq[refSeqId].length) in BAMFileMakeSlice()
4370 alignEnd = self->refSeq[refSeqId].length; in BAMFileMakeSlice()
4372 *rslt = makeSlice(self, refSeqId, alignStart, alignEnd); in BAMFileMakeSlice()
4408 …rc_t CC BAMFileSeek(const BAMFile *self, uint32_t refSeqId, uint64_t alignStart, uint64_t alignEnd) in BAMFileSeek() argument
|
| /dports/www/mediawiki135/mediawiki-1.35.5/includes/ |
| H A D | Linker.php | 392 $frameParams['align'] = $parser->getTargetLanguage()->alignEnd();
|
| /dports/www/mediawiki137/mediawiki-1.37.1/includes/ |
| H A D | Linker.php | 406 $frameParams['align'] = $parser->getTargetLanguage()->alignEnd();
|
| /dports/www/mediawiki136/mediawiki-1.36.3/includes/ |
| H A D | Linker.php | 394 $frameParams['align'] = $parser->getTargetLanguage()->alignEnd();
|
| /dports/www/mediawiki135/mediawiki-1.35.5/languages/ |
| H A D | Language.php | 3107 public function alignEnd() { function in Language
|
| /dports/www/mediawiki136/mediawiki-1.36.3/languages/ |
| H A D | Language.php | 3114 public function alignEnd() { function in Language
|
| /dports/www/mediawiki137/mediawiki-1.37.1/includes/language/ |
| H A D | Language.php | 3041 public function alignEnd() { function in Language
|
| /dports/net-p2p/bazarr/bazarr-1.0.2/frontend/build/static/js/ |
| H A D | 2.4541a288.chunk.js.map | 1 …alignEnd","setMenu","toggleElement","menuProps","metadata","hasShown","DropdownMenu","_useDropdown…
|