Searched refs:alnToUniq (Results 1 – 1 of 1) sorted by relevance
751 int *alnToUniq; /* iAln -> iUnique, or -1 if another was the exemplar */ member3225 int iSeqUnique = unique->alnToUniq[iSeqNonunique]; in ReadTreeMaybeAddLeaf()3903 int iSeqUnique = unique->alnToUniq[iSeqNonunique]; in AlnToConstraints()9296 int *alnToUniq = (int*)mymalloc(aln->nSeq * sizeof(int)); /* i in aln -> iUnique; many -> -1 */ in UniquifyAln() local9303 alnToUniq[i] = -1; in UniquifyAln()9312 alnToUniq[i] = nUniqueSeq; in UniquifyAln()9320 assert(alnToUniq[last] >= 0 && alnToUniq[last] < nUniqueSeq); in UniquifyAln()9321 alnToUniq[i] = alnToUniq[last]; in UniquifyAln()9332 uniquify->alnToUniq = alnToUniq; in UniquifyAln()9341 myfree(unique->alnToUniq, sizeof(int)*unique->nSeq); in FreeUniquify()