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Searched refs:altBubbleLength (Results 1 – 2 of 2) sorted by relevance

/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/graphs/
H A DGraphBasedKBestHaplotypeFinderUnitTest.java168 for ( final int altBubbleLength : Arrays.asList(1, 5, 10) ) { in makeBasicBubbleDataProvider()
169 tests.add(new Object[]{refBubbleLength, altBubbleLength}); in makeBasicBubbleDataProvider()
204 if( refBubbleLength > altBubbleLength ) { in testBasicBubbleData()
206 expectedCigar.add(new CigarElement(altBubbleLength, CigarOperator.M)); in testBasicBubbleData()
207 } else if ( refBubbleLength < altBubbleLength ) { in testBasicBubbleData()
257 for ( final int altBubbleLength : Arrays.asList(1, 5, 10) ) { in makeTripleBubbleDataProvider()
341 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData()
343 expectedCigar.add(new CigarElement(altBubbleLength, CigarOperator.M)); in testTripleBubbleData()
344 } else if ( refBubbleLength < altBubbleLength ) { in testTripleBubbleData()
355 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData()
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H A DJunctionTreeKBestHaplotypeFinderUnitTest.java803 for ( final int altBubbleLength : Arrays.asList(1, 5, 10) ) { in makeBasicBubbleDataProvider()
804 tests.add(new Object[]{refBubbleLength, altBubbleLength}); in makeBasicBubbleDataProvider()
835 if( refBubbleLength > altBubbleLength ) { in testBasicBubbleData()
837 expectedCigar.add(new CigarElement(altBubbleLength, CigarOperator.M)); in testBasicBubbleData()
838 } else if ( refBubbleLength < altBubbleLength ) { in testBasicBubbleData()
853 for ( final int altBubbleLength : Arrays.asList(1, 5, 10) ) { in makeTripleBubbleDataProvider()
938 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData()
940 expectedCigar.add(new CigarElement(altBubbleLength, CigarOperator.M)); in testTripleBubbleData()
941 } else if ( refBubbleLength < altBubbleLength ) { in testTripleBubbleData()
952 if( refBubbleLength > altBubbleLength ) { in testTripleBubbleData()
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