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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/haplotypecaller/readthreading/
H A DJunctionTreeLinkedDeBruijnGraphUnitTest.java115 String altRead1 = "TTTTTGAAAACCCTCGGGGGATAAATCGCGCG"; // 3 SNPs in testGraphPruningSanityCheck() local
122 assembler.addSequence("anonymous", getBytes(altRead1), false); in testGraphPruningSanityCheck()
156 String altRead1 = "GGAAATGTC"; in testSimpleJunctionTreeExample() local
162 assembler.addSequence("anonymous", getBytes(altRead1), false); in testSimpleJunctionTreeExample()
272 String altRead1 = "GGAAATGTC"; in testPruneGraph() local
278 assembler.addSequence("anonymous", getBytes(altRead1), false); in testPruneGraph()