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Searched refs:alts5 (Results 1 – 12 of 12) sorted by relevance

/dports/biology/bowtie2/bowtie2-2.4.4/
H A Dmask.h27 extern int alts5[32];
58 if(alts5[mask] == 1) { in randFromMask()
64 int r = rnd.nextU32() % alts5[mask]; in randFromMask()
66 assert_lt(r, alts5[mask]); in randFromMask()
H A Dmask.cpp23 int alts5[32] = { variable
H A Daligner_swsse_ee_i16.cpp1538 int opts = alts5[mask]; in backtraceNucleotidesEnd2EndSseI16()
H A Daligner_swsse_ee_u8.cpp1526 int opts = alts5[mask]; in backtraceNucleotidesEnd2EndSseU8()
H A Daligner_swsse_loc_i16.cpp1895 int opts = alts5[mask]; in backtraceNucleotidesLocalSseI16()
H A Daligner_swsse_loc_u8.cpp1898 int opts = alts5[mask]; in backtraceNucleotidesLocalSseU8()
/dports/biology/hisat2/hisat2-2.2.1/
H A Dmask.h27 extern int alts5[32];
58 if(alts5[mask] == 1) { in randFromMask()
64 int r = rnd.nextU32() % alts5[mask]; in randFromMask()
66 assert_lt(r, alts5[mask]); in randFromMask()
H A Dmask.cpp23 int alts5[32] = { variable
H A Daligner_swsse_ee_i16.cpp1540 int opts = alts5[mask]; in backtraceNucleotidesEnd2EndSseI16()
H A Daligner_swsse_ee_u8.cpp1525 int opts = alts5[mask]; in backtraceNucleotidesEnd2EndSseU8()
H A Daligner_swsse_loc_i16.cpp1895 int opts = alts5[mask]; in backtraceNucleotidesLocalSseI16()
H A Daligner_swsse_loc_u8.cpp1895 int opts = alts5[mask]; in backtraceNucleotidesLocalSseU8()