Searched refs:apf2 (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/seqan1/seqan-1.3.1/lib/samtools/ |
| H A D | bam2bcf_indel.c | 247 kpa_par_t apf1 = { 1e-4, 1e-2, 10 }, apf2 = { 1e-6, 1e-3, 10 }; in bcf_call_gap_prep() local
248 apf1.bw = apf2.bw = abs(types[t]) + 3; in bcf_call_gap_prep()
305 (uint8_t*)query, qend - qbeg, qq, &apf2, 0, 0); in bcf_call_gap_prep()
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| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/ |
| H A D | bam2bcf_indel.c | 304 kpa_par_t apf1 = { 1e-4, 1e-2, 10 }, apf2 = { 1e-6, 1e-3, 10 }; in bcf_call_gap_prep() local
305 apf1.bw = apf2.bw = abs(types[t]) + 3; in bcf_call_gap_prep()
364 (uint8_t*)query, qend - qbeg, qq, &apf2, 0, 0); in bcf_call_gap_prep()
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| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam2bcf_indel.c | 365 probaln_par_t apf1 = { 1e-4, 1e-2, 10 }, apf2 = { 1e-6, 1e-3, 10 }; in bcf_call_gap_prep() local
366 apf1.bw = apf2.bw = abs(types[t]) + 3; in bcf_call_gap_prep()
430 (uint8_t*)query, qend - qbeg, qq, &apf2, 0, 0); in bcf_call_gap_prep()
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| H A D | bam2bcf_indel.c.pysam.c | 367 probaln_par_t apf1 = { 1e-4, 1e-2, 10 }, apf2 = { 1e-6, 1e-3, 10 }; in bcf_call_gap_prep() local
368 apf1.bw = apf2.bw = abs(types[t]) + 3; in bcf_call_gap_prep()
432 (uint8_t*)query, qend - qbeg, qq, &apf2, 0, 0); in bcf_call_gap_prep()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam2bcf_indel.c | 365 probaln_par_t apf1 = { 1e-4, 1e-2, 10 }, apf2 = { 1e-6, 1e-3, 10 }; in bcf_call_gap_prep() local
366 apf1.bw = apf2.bw = abs(types[t]) + 3; in bcf_call_gap_prep()
430 (uint8_t*)query, qend - qbeg, qq, &apf2, 0, 0); in bcf_call_gap_prep()
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