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Searched refs:arrLen (Results 1 – 25 of 128) sorted by relevance

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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_sarray/
H A DSArrayIndex.cpp107 arrLen = seqLen - w + 1; in SArrayIndex()
109 arrLen = (arrLen / skipGap) + 1; in SArrayIndex()
111 sArray = new quint32[arrLen]; in SArrayIndex()
135 int oldLen = arrLen; in SArrayIndex()
148 if (arrLen != 0) { in SArrayIndex()
167 arrLen = arunner - sArray; in SArrayIndex()
207 sortBit(bitMask, 0, arrLen); in SArrayIndex()
211 if (arrLen < 200 * 1000) { in SArrayIndex()
212 L1_SIZE = arrLen; in SArrayIndex()
225 sort(sArray, 0, arrLen); in SArrayIndex()
[all …]
H A DSArrayIndexSerializer.cpp46 data += QByteArray::number(index->arrLen, 10) + ", "; in serialize()
58 writeArray(file, buff, index->sArray, index->arrLen); in serialize()
61 writeArray(file, buff, index->bitMask, index->arrLen); in serialize()
141 for (int i = 0; i < arrLen; i++) { in readArray()
175 if (0 == *len && (arrLen - 1) != i) { in readArray()
212 index->arrLen = getNextInt(data, eol, intErr); in deserialize()
228 if (index->w <= 0 || index->arrLen <= 0) { in deserialize()
233 index->sArray = new quint32[index->arrLen]; in deserialize()
240 readArray(file, buff, &len, &pos, &bytes, &lineIdx, index->sArray, index->arrLen, ti); in deserialize()
246 index->bitMask = new quint32[index->arrLen]; in deserialize()
[all …]
H A DSArrayIndex.h132 return arrLen; in getSArraySize()
147 int arrLen; // size of the array == sequence len with unknown chars removed variable
185 assert(x1 - bitMask >= 0 && x1 - bitMask < arrLen); in swapBit()
186 assert(x2 - bitMask >= 0 && x2 - bitMask < arrLen); in swapBit()
250 assert(sarr >= sArray && sarr < sArray + arrLen); in sarr2seq()
H A DSArrayIndexSerializer.h43 …*buff, int *len, int *pos, int *bytes, int *lineIdx, quint32 *array, int arrLen, TaskStateInfo &ti…
/dports/sysutils/kubectl/kubernetes-1.22.2/pkg/volume/azuredd/
H A Dazure_common_windows.go70 arrLen := len(arr)
71 if arrLen < 3 {
76 klog.V(4).Infof("found a disk, location: %q, lun: %q", location, arr[arrLen-1])
79 l, err := strconv.Atoi(arr[arrLen-1])
81 …ngf("cannot parse element from data structure, location: %q, element: %q", location, arr[arrLen-1])
/dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/
H A DGenomeAlignerIndex.cpp219 SAType arrLen = 0; in loadPart() local
222 buildPart(indexPart.seqStarts[part], indexPart.seqLengths[part], arrLen); in loadPart()
223 indexPart.saLengths[part] = arrLen; in loadPart()
227 SyncSort<BMType, SAType> s(bitMask, sArray, 0, arrLen); in loadPart()
233 indexPart.writePart(part, arrLen); in loadPart()
422 void GenomeAlignerIndex::buildPart(SAType start, SAType length, SAType &arrLen) { in buildPart() argument
424 initSArray(start, length, arrLen); in buildPart()
435 for (BMType *end = mrunner + arrLen; mrunner < end; arunner++, mrunner++) { in buildPart()
455 void GenomeAlignerIndex::initSArray(SAType start, SAType length, SAType &arrLen) { in initSArray() argument
479 arrLen = 0; in initSArray()
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H A DGenomeAlignerIndexPart.cpp163 void IndexPart::writePart(int part, quint32 arrLen) { in writePart() argument
170 for (quint32 i = 0; i < arrLen; i++) { in writePart()
176 partFiles[part]->write((char *)&arrLen, 1 * sizeof(SAType)); in writePart()
178 partFiles[part]->write((char *)sArray, arrLen * sizeof(SAType)); in writePart()
179 partFiles[part]->write((char *)bitMask, arrLen * sizeof(BMType)); in writePart()
H A DGenomeAlignerIndex.h115 void buildPart(SAType start, SAType length, SAType &arrLen);
116 void initSArray(SAType start, SAType length, SAType &arrLen);
H A DGenomeAlignerIndexPart.h54 void writePart(int part, quint32 arrLen);
/dports/science/hdf5/hdf5-1.10.6/java/src/jni/
H A Dh5pFCPLImp.c44 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1version() local
53 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, version_info)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1version()
57 if (arrLen < 4) in Java_hdf_hdf5lib_H5_H5Pget_1version()
158 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1sizes() local
168 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1sizes()
172 if (arrLen < 2) in Java_hdf_hdf5lib_H5_H5Pget_1sizes()
220 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1sym_1k() local
229 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1sym_1k()
233 if (arrLen < 2) in Java_hdf_hdf5lib_H5_H5Pget_1sym_1k()
H A Dh5pDCPLImp.c88 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pset_1chunk() local
100 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dim)) < 0) { in Java_hdf_hdf5lib_H5_H5Pset_1chunk()
105 rank = (size_t) arrLen / sizeof(jlong); in Java_hdf_hdf5lib_H5_H5Pset_1chunk()
145 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1chunk() local
154 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1chunk()
158 if (arrLen < max_ndims) in Java_hdf_hdf5lib_H5_H5Pget_1chunk()
1106 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1external() local
1116 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1external()
1120 if ((size != NULL) && (arrLen < 2)) in Java_hdf_hdf5lib_H5_H5Pget_1external()
/dports/security/vault/vault-1.8.2/vendor/github.com/hashicorp/vic/tests/
H A Dget_test_url.sh18 arrLen=${#unit_test_array[@]}
20 echo $TEST_USERNAME:$TEST_PASSWORD@${unit_test_array[$(($DRONE_BUILD_NUMBER % $arrLen))]}
/dports/devel/intel-graphics-compiler/intel-graphics-compiler-igc-1.0.9636/visa/iga/IGALibrary/api/
H A Digax.hpp514 size_t arrLen = sizeof(arrAuto)/sizeof(arrAuto[0]); in enumerate() local
515 IGA_CHECKED_CALL(iga_opspec_enumerate, (iga_gen_t)p, arrPtr, &arrLen); in enumerate()
516 if (arrLen > sizeof(arrAuto)/sizeof(arrAuto[0])) { in enumerate()
517 arrPtr = (iga_opspec_t *)alloca(arrLen * sizeof(iga_opspec_t)); in enumerate()
518 IGA_CHECKED_CALL(iga_opspec_enumerate, (iga_gen_t)p, arrPtr, &arrLen); in enumerate()
521 vec.reserve(arrLen); in enumerate()
522 for (size_t i = 0; i < arrLen; i++) { in enumerate()
/dports/databases/retcl/retcl-0.4.0/
H A Dretcl.tm607 lassign [my ParseLine $buffer $startIdx+1] eol arrLen
613 if {$arrLen eq {-1}} {
618 if {$arrLen eq {0}} {
625 while {$arrLen} {
633 incr arrLen -1
H A Dretcl-0.4.0.tm607 lassign [my ParseLine $buffer $startIdx+1] eol arrLen
613 if {$arrLen eq {-1}} {
618 if {$arrLen eq {0}} {
625 while {$arrLen} {
633 incr arrLen -1
/dports/java/java3d/java3d-1.5.2/j3d-core/src/classes/share/javax/media/j3d/
H A DBHTree.java870 int i, arrLen; in computeMeansAndSumSquares() local
874 arrLen = centerValuesIndex.length; in computeMeansAndSumSquares()
881 for(i=arrLen-1; i>=0 ; i--) { in computeMeansAndSumSquares()
887 means[0] = sumCenters[0]/(float)arrLen; in computeMeansAndSumSquares()
888 means[1] = sumCenters[1]/(float)arrLen; in computeMeansAndSumSquares()
889 means[2] = sumCenters[2]/(float)arrLen; in computeMeansAndSumSquares()
891 for(i=arrLen-1; i>=0 ; i--) { in computeMeansAndSumSquares()
/dports/textproc/gron.awk/gron.awk-0.0.1/
H A Dmakesure190 quicksort(GlobFiles,0,arrLen(GlobFiles)-1)
393 if (arrLen(ArgGoals) == 0)
624 function arrLen(arr) { return +arr[-7] }
625 function arrLast(arr) { return arr[arrLen(arr)-1] }
H A Dgron.awk204 l = arrLen(Path)
232 quicksort(addrs, 0, (l=arrLen(addrs))-1)
261 function arrLen(arr) { return +arr[-7] } function
/dports/security/vault/vault-1.8.2/vendor/github.com/snowflakedb/gosnowflake/vendor/github.com/apache/arrow/go/arrow/ipc/
H A Dwriter.go251 arrLen := int64(arr.Len())
253 minLength := paddedLength(arrLen*typeWidth, kArrowAlignment)
260 len := minI64(bitutil.CeilByte64(arrLen*typeWidth), int64(data.Len())-offset)
/dports/security/vault/vault-1.8.2/vendor/github.com/apache/arrow/go/arrow/ipc/
H A Dwriter.go251 arrLen := int64(arr.Len())
253 minLength := paddedLength(arrLen*typeWidth, kArrowAlignment)
260 len := minI64(bitutil.CeilByte64(arrLen*typeWidth), int64(data.Len())-offset)
/dports/math/clasp/clasp-3.3.5/tests/
H A Dcli_test.cpp198 int nSubkeys, arrLen, nValues; variable
200 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_ROOT, &nSubkeys, &arrLen, &help, &nValues) == 4);
201 …REQUIRE((nSubkeys > 0 && arrLen == -1 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(C…
203 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_SOLVER, &nSubkeys, &arrLen, &help, &nValues) == 4);
204 …REQUIRE((nSubkeys > 0 && arrLen >= 0 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(Cl…
209 REQUIRE(config.getKeyInfo(s1, &nSubkeys, &arrLen, &help, &nValues) == 4);
210 REQUIRE((nSubkeys == nSolverKeys && arrLen == -1));
/dports/math/clingo/clingo-5.5.1/clasp/clasp-da10954/tests/
H A Dcli_test.cpp198 int nSubkeys, arrLen, nValues; variable
200 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_ROOT, &nSubkeys, &arrLen, &help, &nValues) == 4);
201 …REQUIRE((nSubkeys > 0 && arrLen == -1 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(C…
203 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_SOLVER, &nSubkeys, &arrLen, &help, &nValues) == 4);
204 …REQUIRE((nSubkeys > 0 && arrLen >= 0 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(Cl…
209 REQUIRE(config.getKeyInfo(s1, &nSubkeys, &arrLen, &help, &nValues) == 4);
210 REQUIRE((nSubkeys == nSolverKeys && arrLen == -1));
/dports/math/clingo/clingo-5.5.1/clasp/tests/
H A Dcli_test.cpp198 int nSubkeys, arrLen, nValues; variable
200 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_ROOT, &nSubkeys, &arrLen, &help, &nValues) == 4);
201 …REQUIRE((nSubkeys > 0 && arrLen == -1 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(C…
203 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_SOLVER, &nSubkeys, &arrLen, &help, &nValues) == 4);
204 …REQUIRE((nSubkeys > 0 && arrLen >= 0 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(Cl…
209 REQUIRE(config.getKeyInfo(s1, &nSubkeys, &arrLen, &help, &nValues) == 4);
210 REQUIRE((nSubkeys == nSolverKeys && arrLen == -1));
/dports/www/grafana8/grafana-8.3.6/vendor/github.com/apache/arrow/go/arrow/ipc/
H A Dwriter.go263 arrLen := int64(arr.Len())
265 minLength := paddedLength(arrLen*typeWidth, kArrowAlignment)
272 len := minI64(bitutil.CeilByte64(arrLen*typeWidth), int64(data.Len())-offset)
/dports/net/freeswitch/freeswitch-1.10.3.-release/clients/flex/com/adobe/crypto/
H A DMD5Stream.as58 private var arrLen:int;
120 padArray(arrLen);
161 arrLen = 0;
184 arrLen += closestChunkLen;
330 arrLen = arr.length;

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