/dports/biology/ugene/ugene-40.1/src/corelibs/U2Algorithm/src/util_sarray/ |
H A D | SArrayIndex.cpp | 107 arrLen = seqLen - w + 1; in SArrayIndex() 109 arrLen = (arrLen / skipGap) + 1; in SArrayIndex() 111 sArray = new quint32[arrLen]; in SArrayIndex() 135 int oldLen = arrLen; in SArrayIndex() 148 if (arrLen != 0) { in SArrayIndex() 167 arrLen = arunner - sArray; in SArrayIndex() 207 sortBit(bitMask, 0, arrLen); in SArrayIndex() 211 if (arrLen < 200 * 1000) { in SArrayIndex() 212 L1_SIZE = arrLen; in SArrayIndex() 225 sort(sArray, 0, arrLen); in SArrayIndex() [all …]
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H A D | SArrayIndexSerializer.cpp | 46 data += QByteArray::number(index->arrLen, 10) + ", "; in serialize() 58 writeArray(file, buff, index->sArray, index->arrLen); in serialize() 61 writeArray(file, buff, index->bitMask, index->arrLen); in serialize() 141 for (int i = 0; i < arrLen; i++) { in readArray() 175 if (0 == *len && (arrLen - 1) != i) { in readArray() 212 index->arrLen = getNextInt(data, eol, intErr); in deserialize() 228 if (index->w <= 0 || index->arrLen <= 0) { in deserialize() 233 index->sArray = new quint32[index->arrLen]; in deserialize() 240 readArray(file, buff, &len, &pos, &bytes, &lineIdx, index->sArray, index->arrLen, ti); in deserialize() 246 index->bitMask = new quint32[index->arrLen]; in deserialize() [all …]
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H A D | SArrayIndex.h | 132 return arrLen; in getSArraySize() 147 int arrLen; // size of the array == sequence len with unknown chars removed variable 185 assert(x1 - bitMask >= 0 && x1 - bitMask < arrLen); in swapBit() 186 assert(x2 - bitMask >= 0 && x2 - bitMask < arrLen); in swapBit() 250 assert(sarr >= sArray && sarr < sArray + arrLen); in sarr2seq()
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H A D | SArrayIndexSerializer.h | 43 …*buff, int *len, int *pos, int *bytes, int *lineIdx, quint32 *array, int arrLen, TaskStateInfo &ti…
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/dports/sysutils/kubectl/kubernetes-1.22.2/pkg/volume/azuredd/ |
H A D | azure_common_windows.go | 70 arrLen := len(arr) 71 if arrLen < 3 { 76 klog.V(4).Infof("found a disk, location: %q, lun: %q", location, arr[arrLen-1]) 79 l, err := strconv.Atoi(arr[arrLen-1]) 81 …ngf("cannot parse element from data structure, location: %q, element: %q", location, arr[arrLen-1])
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/dports/biology/ugene/ugene-40.1/src/plugins/genome_aligner/src/ |
H A D | GenomeAlignerIndex.cpp | 219 SAType arrLen = 0; in loadPart() local 222 buildPart(indexPart.seqStarts[part], indexPart.seqLengths[part], arrLen); in loadPart() 223 indexPart.saLengths[part] = arrLen; in loadPart() 227 SyncSort<BMType, SAType> s(bitMask, sArray, 0, arrLen); in loadPart() 233 indexPart.writePart(part, arrLen); in loadPart() 422 void GenomeAlignerIndex::buildPart(SAType start, SAType length, SAType &arrLen) { in buildPart() argument 424 initSArray(start, length, arrLen); in buildPart() 435 for (BMType *end = mrunner + arrLen; mrunner < end; arunner++, mrunner++) { in buildPart() 455 void GenomeAlignerIndex::initSArray(SAType start, SAType length, SAType &arrLen) { in initSArray() argument 479 arrLen = 0; in initSArray() [all …]
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H A D | GenomeAlignerIndexPart.cpp | 163 void IndexPart::writePart(int part, quint32 arrLen) { in writePart() argument 170 for (quint32 i = 0; i < arrLen; i++) { in writePart() 176 partFiles[part]->write((char *)&arrLen, 1 * sizeof(SAType)); in writePart() 178 partFiles[part]->write((char *)sArray, arrLen * sizeof(SAType)); in writePart() 179 partFiles[part]->write((char *)bitMask, arrLen * sizeof(BMType)); in writePart()
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H A D | GenomeAlignerIndex.h | 115 void buildPart(SAType start, SAType length, SAType &arrLen); 116 void initSArray(SAType start, SAType length, SAType &arrLen);
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H A D | GenomeAlignerIndexPart.h | 54 void writePart(int part, quint32 arrLen);
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/dports/science/hdf5/hdf5-1.10.6/java/src/jni/ |
H A D | h5pFCPLImp.c | 44 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1version() local 53 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, version_info)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1version() 57 if (arrLen < 4) in Java_hdf_hdf5lib_H5_H5Pget_1version() 158 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1sizes() local 168 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1sizes() 172 if (arrLen < 2) in Java_hdf_hdf5lib_H5_H5Pget_1sizes() 220 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1sym_1k() local 229 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1sym_1k() 233 if (arrLen < 2) in Java_hdf_hdf5lib_H5_H5Pget_1sym_1k()
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H A D | h5pDCPLImp.c | 88 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pset_1chunk() local 100 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dim)) < 0) { in Java_hdf_hdf5lib_H5_H5Pset_1chunk() 105 rank = (size_t) arrLen / sizeof(jlong); in Java_hdf_hdf5lib_H5_H5Pset_1chunk() 145 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1chunk() local 154 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, dims)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1chunk() 158 if (arrLen < max_ndims) in Java_hdf_hdf5lib_H5_H5Pget_1chunk() 1106 jsize arrLen; in Java_hdf_hdf5lib_H5_H5Pget_1external() local 1116 if ((arrLen = ENVPTR->GetArrayLength(ENVONLY, size)) < 0) { in Java_hdf_hdf5lib_H5_H5Pget_1external() 1120 if ((size != NULL) && (arrLen < 2)) in Java_hdf_hdf5lib_H5_H5Pget_1external()
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/dports/security/vault/vault-1.8.2/vendor/github.com/hashicorp/vic/tests/ |
H A D | get_test_url.sh | 18 arrLen=${#unit_test_array[@]} 20 echo $TEST_USERNAME:$TEST_PASSWORD@${unit_test_array[$(($DRONE_BUILD_NUMBER % $arrLen))]}
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/dports/devel/intel-graphics-compiler/intel-graphics-compiler-igc-1.0.9636/visa/iga/IGALibrary/api/ |
H A D | igax.hpp | 514 size_t arrLen = sizeof(arrAuto)/sizeof(arrAuto[0]); in enumerate() local 515 IGA_CHECKED_CALL(iga_opspec_enumerate, (iga_gen_t)p, arrPtr, &arrLen); in enumerate() 516 if (arrLen > sizeof(arrAuto)/sizeof(arrAuto[0])) { in enumerate() 517 arrPtr = (iga_opspec_t *)alloca(arrLen * sizeof(iga_opspec_t)); in enumerate() 518 IGA_CHECKED_CALL(iga_opspec_enumerate, (iga_gen_t)p, arrPtr, &arrLen); in enumerate() 521 vec.reserve(arrLen); in enumerate() 522 for (size_t i = 0; i < arrLen; i++) { in enumerate()
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/dports/databases/retcl/retcl-0.4.0/ |
H A D | retcl.tm | 607 lassign [my ParseLine $buffer $startIdx+1] eol arrLen 613 if {$arrLen eq {-1}} { 618 if {$arrLen eq {0}} { 625 while {$arrLen} { 633 incr arrLen -1
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H A D | retcl-0.4.0.tm | 607 lassign [my ParseLine $buffer $startIdx+1] eol arrLen 613 if {$arrLen eq {-1}} { 618 if {$arrLen eq {0}} { 625 while {$arrLen} { 633 incr arrLen -1
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/dports/java/java3d/java3d-1.5.2/j3d-core/src/classes/share/javax/media/j3d/ |
H A D | BHTree.java | 870 int i, arrLen; in computeMeansAndSumSquares() local 874 arrLen = centerValuesIndex.length; in computeMeansAndSumSquares() 881 for(i=arrLen-1; i>=0 ; i--) { in computeMeansAndSumSquares() 887 means[0] = sumCenters[0]/(float)arrLen; in computeMeansAndSumSquares() 888 means[1] = sumCenters[1]/(float)arrLen; in computeMeansAndSumSquares() 889 means[2] = sumCenters[2]/(float)arrLen; in computeMeansAndSumSquares() 891 for(i=arrLen-1; i>=0 ; i--) { in computeMeansAndSumSquares()
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/dports/textproc/gron.awk/gron.awk-0.0.1/ |
H A D | makesure | 190 quicksort(GlobFiles,0,arrLen(GlobFiles)-1) 393 if (arrLen(ArgGoals) == 0) 624 function arrLen(arr) { return +arr[-7] } 625 function arrLast(arr) { return arr[arrLen(arr)-1] }
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H A D | gron.awk | 204 l = arrLen(Path) 232 quicksort(addrs, 0, (l=arrLen(addrs))-1) 261 function arrLen(arr) { return +arr[-7] } function
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/dports/security/vault/vault-1.8.2/vendor/github.com/snowflakedb/gosnowflake/vendor/github.com/apache/arrow/go/arrow/ipc/ |
H A D | writer.go | 251 arrLen := int64(arr.Len()) 253 minLength := paddedLength(arrLen*typeWidth, kArrowAlignment) 260 len := minI64(bitutil.CeilByte64(arrLen*typeWidth), int64(data.Len())-offset)
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/dports/security/vault/vault-1.8.2/vendor/github.com/apache/arrow/go/arrow/ipc/ |
H A D | writer.go | 251 arrLen := int64(arr.Len()) 253 minLength := paddedLength(arrLen*typeWidth, kArrowAlignment) 260 len := minI64(bitutil.CeilByte64(arrLen*typeWidth), int64(data.Len())-offset)
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/dports/math/clasp/clasp-3.3.5/tests/ |
H A D | cli_test.cpp | 198 int nSubkeys, arrLen, nValues; variable 200 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_ROOT, &nSubkeys, &arrLen, &help, &nValues) == 4); 201 …REQUIRE((nSubkeys > 0 && arrLen == -1 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(C… 203 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_SOLVER, &nSubkeys, &arrLen, &help, &nValues) == 4); 204 …REQUIRE((nSubkeys > 0 && arrLen >= 0 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(Cl… 209 REQUIRE(config.getKeyInfo(s1, &nSubkeys, &arrLen, &help, &nValues) == 4); 210 REQUIRE((nSubkeys == nSolverKeys && arrLen == -1));
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/dports/math/clingo/clingo-5.5.1/clasp/clasp-da10954/tests/ |
H A D | cli_test.cpp | 198 int nSubkeys, arrLen, nValues; variable 200 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_ROOT, &nSubkeys, &arrLen, &help, &nValues) == 4); 201 …REQUIRE((nSubkeys > 0 && arrLen == -1 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(C… 203 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_SOLVER, &nSubkeys, &arrLen, &help, &nValues) == 4); 204 …REQUIRE((nSubkeys > 0 && arrLen >= 0 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(Cl… 209 REQUIRE(config.getKeyInfo(s1, &nSubkeys, &arrLen, &help, &nValues) == 4); 210 REQUIRE((nSubkeys == nSolverKeys && arrLen == -1));
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/dports/math/clingo/clingo-5.5.1/clasp/tests/ |
H A D | cli_test.cpp | 198 int nSubkeys, arrLen, nValues; variable 200 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_ROOT, &nSubkeys, &arrLen, &help, &nValues) == 4); 201 …REQUIRE((nSubkeys > 0 && arrLen == -1 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(C… 203 REQUIRE(config.getKeyInfo(ClaspCliConfig::KEY_SOLVER, &nSubkeys, &arrLen, &help, &nValues) == 4); 204 …REQUIRE((nSubkeys > 0 && arrLen >= 0 && help != 0 && nValues == -1 && ClaspCliConfig::isLeafKey(Cl… 209 REQUIRE(config.getKeyInfo(s1, &nSubkeys, &arrLen, &help, &nValues) == 4); 210 REQUIRE((nSubkeys == nSolverKeys && arrLen == -1));
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/dports/www/grafana8/grafana-8.3.6/vendor/github.com/apache/arrow/go/arrow/ipc/ |
H A D | writer.go | 263 arrLen := int64(arr.Len()) 265 minLength := paddedLength(arrLen*typeWidth, kArrowAlignment) 272 len := minI64(bitutil.CeilByte64(arrLen*typeWidth), int64(data.Len())-offset)
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/dports/net/freeswitch/freeswitch-1.10.3.-release/clients/flex/com/adobe/crypto/ |
H A D | MD5Stream.as | 58 private var arrLen:int; 120 padArray(arrLen); 161 arrLen = 0; 184 arrLen += closestChunkLen; 330 arrLen = arr.length;
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