Searched refs:assertEqualBamFiles (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/haplotype/ |
| H A D | HaplotypeBAMWriterUnitTest.java | 75 …SamAssertionUtils.assertEqualBamFiles(outPath.toFile(), expectedFile, false, ValidationStringency.… in testWriteToBAMFile()
90 …SamAssertionUtils.assertEqualBamFiles(outPath.toFile(), expectedFile, false, ValidationStringency.… in testWriteToBAMFileWithIndex()
105 …SamAssertionUtils.assertEqualBamFiles(outPath.toFile(), expectedFile, false, ValidationStringency.… in testWriteToBAMFileWithMD5()
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| /dports/biology/gatk/gatk-4.2.0.0/src/testUtils/java/org/broadinstitute/hellbender/testutils/ |
| H A D | SamAssertionUtils.java | 360 public static void assertEqualBamFiles( in assertEqualBamFiles() method in SamAssertionUtils
365 assertEqualBamFiles(resultFile, expectedFile, null, compareBamFilesSorted, stringency); in assertEqualBamFiles()
372 public static void assertEqualBamFiles( in assertEqualBamFiles() method in SamAssertionUtils
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| H A D | IntegrationTestSpec.java | 220 …SamAssertionUtils.assertEqualBamFiles(resultFile, expectedFile, compareBamFilesSorted, stringency); in assertMatchingFiles()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/pathseq/ |
| H A D | PathSeqPipelineSparkIntegrationTest.java | 78 …SamAssertionUtils.assertEqualBamFiles(outputBamFile, expectedBamFile, true, ValidationStringency.S… in testPipelineTool()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/spark/pipelines/ |
| H A D | BQSRPipelineSparkIntegrationTest.java | 98 …SamAssertionUtils.assertEqualBamFiles(outFile, new File(params.expectedFileName), referenceFile, t… in testBQSRLocalRef()
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| H A D | ReadsPipelineSparkIntegrationTest.java | 129 …SamAssertionUtils.assertEqualBamFiles(outFileBam, new File(params.expectedBamFileName), referenceF… in testReadsPipelineSpark()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/ |
| H A D | HtsgetReaderIntegrationTest.java | 87 … SamAssertionUtils.assertEqualBamFiles(output, expected, false, ValidationStringency.LENIENT); in testSuccessfulParameters()
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| H A D | PrintReadsIntegrationTest.java | 104 … SamAssertionUtils.assertEqualBamFiles(out, out2, false, ValidationStringency.DEFAULT_STRINGENCY); in testHttpPaths()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/markduplicates/ |
| H A D | AbstractMarkDuplicatesCommandLineProgramTest.java | 817 …SamAssertionUtils.assertEqualBamFiles(outputFile, expectedOutput, false, ValidationStringency.SILE… in testMDOrderImpl()
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