Searched refs:atomsVisited (Results 1 – 2 of 2) sorted by relevance
278 Set<Atom> atomsVisited = new HashSet<Atom>(); in processSuffixLabelling() local282 atomsVisited.addAll(nextAtoms); in processSuffixLabelling()289 assignLocantsAndExploreNeighbours(elementCount, atomsToIgnore, atomsVisited, atomsToConsider); in processSuffixLabelling()294 Set<Atom> atomsVisited = new HashSet<Atom>(); in processNonCarboxylicAcidLabelling() local299 atomsVisited.add(firstAtom); in processNonCarboxylicAcidLabelling()312 atomsVisited.add(atom); in assignLocantsAndExploreNeighbours()317 atomsToExplore.removeAll(atomsVisited); in assignLocantsAndExploreNeighbours()737 Set<Atom> atomsVisited = new HashSet<Atom>(); in getAtomByAminoAcidStyleLocant() local740 atomsVisited.add(neighbour); in getAtomByAminoAcidStyleLocant()758 atomsVisited.add(atom); in getAtomByAminoAcidStyleLocant()[all …]
170 Set<Atom> atomsVisited = new HashSet<Atom>(); in depthFirstSearchForNonSuffixAtomWithLocant() local173 atomsVisited.add(currentAtom); in depthFirstSearchForNonSuffixAtomWithLocant()176 if (atomsVisited.contains(neighbour)){//already visited in depthFirstSearchForNonSuffixAtomWithLocant()205 Set<Atom> atomsVisited = new HashSet<Atom>(); in depthFirstSearchForAtomWithNumericLocant() local208 atomsVisited.add(currentAtom); in depthFirstSearchForAtomWithNumericLocant()211 if (atomsVisited.contains(neighbour)){//already visited in depthFirstSearchForAtomWithNumericLocant()