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Searched refs:available_parameters (Results 1 – 21 of 21) sorted by relevance

/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/Tools/Run/
H A DWBCommandExts.t49 is_deeply( [$fac->available_parameters('parameters')], [qw( command narf schlurb )], "avail parms");
50 is_deeply( [$fac->available_parameters('switches')], ['freen'], "avail switches");
51 is_deeply( [$fac->available_parameters('commands')], [qw(rpsblast find goob blorb multiglob)], "ava…
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/Result/
H A DPullResultI.pm469 sub available_parameters { subroutine
472 return $self->{_parameters}->available_parameters;
H A DGenericResult.pm524 sub available_parameters{ subroutine
526 return $self->{'_parameters'}->available_parameters;
H A DResultI.pm350 sub available_parameters{ subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/
H A DParameterBaseI.pm229 sub available_parameters { subroutine
/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/
H A DSamtools.t51 is( scalar $samt->available_parameters, 14, "all available options");
52 is( scalar $samt->available_parameters('params'), 9, "available parameters" );
53 is( scalar $samt->available_parameters('switches'), 5, "available switches" );
H A DBEDTools.t207 …is( scalar $bedtoolsfac->available_parameters, $p{$_}+1+$s{$_}, "all available options for '$_'" );
208 …is( scalar $bedtoolsfac->available_parameters('params'), $p{$_}+1, "available parameters for '$_'"…
209 …is( scalar $bedtoolsfac->available_parameters('switches'), $s{$_}, "available switches for '$_'" );
H A DSoapEU-unit.t118 …is_deeply( [sort $dumfac->available_parameters], [sort qw( db id reldate mindate maxdate datetype …
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/Run/
H A DGenericParameters.pm128 sub available_parameters { subroutine
/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/DB/
H A DSoapEUtilities.pm667 sub available_parameters { subroutine
675 $self->_soap_facs($util)->available_parameters(%args);
H A DESoap.pm311 sub available_parameters { subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/Run/WrapperBase/
H A DCommandExts.pm1327 sub available_parameters { subroutine
1359 sub available_commands { shift->available_parameters('commands') }
1360 sub filespec { shift->available_parameters('filespec') }
/dports/biology/p5-BioPerl/BioPerl-1.7.7/examples/searchio/
H A Dblast_example.pl22 my @params = $result->available_parameters;
/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/StandAloneBlastPlus/
H A DBlastMethods.pm264 my @avail_parms = $self->factory->available_parameters('all');
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SearchIO/Writer/
H A DHTMLResultWriter.pm469 my ($pav, $sav) = ($result->available_parameters, $result->available_statistics);
475 foreach my $param ( sort $result->available_parameters ) {
H A DTextResultWriter.pm467 $result->available_parameters ) {
/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/
H A DBEDTools.pm904 sub available_commands { shift->available_parameters('commands') };
906 sub filespec { shift->available_parameters('filespec') };
H A DInfernal.pm779 sub available_parameters { subroutine
/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/Alignment/
H A DBlat.pm425 sub available_parameters { subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SearchIO/
H A Derpin.t29 is($result->available_parameters, 2, "Result parameters");
H A Dinfernal.t184 is($result->available_parameters, 0, "Result parameters");
421 is($result->available_parameters, 0, "Result parameters");
677 is($result->available_parameters, 0, "Result parameters");