/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/Tools/Run/ |
H A D | WBCommandExts.t | 49 is_deeply( [$fac->available_parameters('parameters')], [qw( command narf schlurb )], "avail parms"); 50 is_deeply( [$fac->available_parameters('switches')], ['freen'], "avail switches"); 51 is_deeply( [$fac->available_parameters('commands')], [qw(rpsblast find goob blorb multiglob)], "ava…
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/Result/ |
H A D | PullResultI.pm | 469 sub available_parameters { subroutine 472 return $self->{_parameters}->available_parameters;
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H A D | GenericResult.pm | 524 sub available_parameters{ subroutine 526 return $self->{'_parameters'}->available_parameters;
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H A D | ResultI.pm | 350 sub available_parameters{ subroutine
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/ |
H A D | ParameterBaseI.pm | 229 sub available_parameters { subroutine
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/ |
H A D | Samtools.t | 51 is( scalar $samt->available_parameters, 14, "all available options"); 52 is( scalar $samt->available_parameters('params'), 9, "available parameters" ); 53 is( scalar $samt->available_parameters('switches'), 5, "available switches" );
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H A D | BEDTools.t | 207 …is( scalar $bedtoolsfac->available_parameters, $p{$_}+1+$s{$_}, "all available options for '$_'" ); 208 …is( scalar $bedtoolsfac->available_parameters('params'), $p{$_}+1, "available parameters for '$_'"… 209 …is( scalar $bedtoolsfac->available_parameters('switches'), $s{$_}, "available switches for '$_'" );
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H A D | SoapEU-unit.t | 118 …is_deeply( [sort $dumfac->available_parameters], [sort qw( db id reldate mindate maxdate datetype …
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/Run/ |
H A D | GenericParameters.pm | 128 sub available_parameters { subroutine
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/DB/ |
H A D | SoapEUtilities.pm | 667 sub available_parameters { subroutine 675 $self->_soap_facs($util)->available_parameters(%args);
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H A D | ESoap.pm | 311 sub available_parameters { subroutine
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/Run/WrapperBase/ |
H A D | CommandExts.pm | 1327 sub available_parameters { subroutine 1359 sub available_commands { shift->available_parameters('commands') } 1360 sub filespec { shift->available_parameters('filespec') }
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/examples/searchio/ |
H A D | blast_example.pl | 22 my @params = $result->available_parameters;
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/StandAloneBlastPlus/ |
H A D | BlastMethods.pm | 264 my @avail_parms = $self->factory->available_parameters('all');
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SearchIO/Writer/ |
H A D | HTMLResultWriter.pm | 469 my ($pav, $sav) = ($result->available_parameters, $result->available_statistics); 475 foreach my $param ( sort $result->available_parameters ) {
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H A D | TextResultWriter.pm | 467 $result->available_parameters ) {
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/ |
H A D | BEDTools.pm | 904 sub available_commands { shift->available_parameters('commands') }; 906 sub filespec { shift->available_parameters('filespec') };
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H A D | Infernal.pm | 779 sub available_parameters { subroutine
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/Tools/Run/Alignment/ |
H A D | Blat.pm | 425 sub available_parameters { subroutine
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SearchIO/ |
H A D | erpin.t | 29 is($result->available_parameters, 2, "Result parameters");
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H A D | infernal.t | 184 is($result->available_parameters, 0, "Result parameters"); 421 is($result->available_parameters, 0, "Result parameters"); 677 is($result->available_parameters, 0, "Result parameters");
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