Searched refs:b_indel_open_score_ (Results 1 – 2 of 2) sorted by relevance
14 b_indel_open_score_(0) { in Score()27 b_indel_open_score_ = 2; // TODO compl. arbitrary!; in Score()43 b_indel_open_score_ = -10; // TODO compl. arbitrary!; in Score()56 options.get(Options::BDelOpenScore,b_indel_open_score_,b_indel_open_score_); in Score()72 b_indel_open_score_ = s.b_indel_open_score_; in Score()107 out << "base indel open: " << score.b_indel_open_score_ << std::endl; in operator <<()
42 double b_indel_open_score_; variable284 return s_.b_indel_open_score_+down+over; in delO()291 return s_.b_indel_open_score_+down+over; in insertO()663 return s_.b_indel_open_score_+down+over; in delO()670 return s_.b_indel_open_score_+down+over; in insertO()1170 return s_.b_indel_open_score_+down+over; in delO()1177 return s_.b_indel_open_score_+down+over; in insertO()1409 return a.p[ALPHA_PRO_BASE]*s_.b_indel_open_score_+down+over; in delO()1416 return b.p[ALPHA_PRO_BASE]*s_.b_indel_open_score_+down+over; in insertO()1771 return s_.b_indel_open_score_+down+over; in delO()[all …]