Searched refs:bamfp (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | ProcessReads.h | 173 …: tc(tc), index(index), model(model), bamfp(nullptr), bamfps(nullptr), bamh(nullptr), opt(opt), nu… in MasterProcessor()
209 if (bamfp) { in ~MasterProcessor()
210 hts_close(bamfp); in ~MasterProcessor()
211 bamfp = nullptr; in ~MasterProcessor()
237 htsFile *bamfp; variable
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| H A D | ProcessReads.cpp | 493 bamfp = sam_open(bamfn.c_str(), "wb"); in processAln()
494 int r = sam_hdr_write(bamfp, bamh); in processAln()
499 hts_set_threads(bamfp, opt.threads); in processAln()
593 bamfp = sam_open(bamfn.c_str(), "wb9"); in processAln()
594 int r = sam_hdr_write(bamfp, bamh); in processAln()
597 hts_set_threads(bamfp, opt.threads); in processAln()
605 BGZF* ofp = bamfp->fp.bgzf; in processAln()
657 sam_close(bamfp); in processAln()
658 bamfp = nullptr; in processAln()
834 int r = sam_write1(bamfp, bamh, &b); in writePseudoBam()
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| /dports/biology/subread/subread-2.0.2-source/src/ |
| H A D | HelperFunctions.c | 721 …SamBam_FILE * bamfp = SamBam_fopen("/usr/local/work/liao/arena/Rsubread_Paper_OCT2016/RNAseq-SimHG… in test_bam_reader() local
722 assert(bamfp); in test_bam_reader()
726 char * ret = SamBam_fgets(bamfp, linebuf, 1999, 1); in test_bam_reader()
730 SamBam_fclose(bamfp); in test_bam_reader()
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