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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/codecs/gtf/
H A DGencodeGtfFeature.java281 this.baseData = baseData; in GencodeGtfFeature()
292 Utils.nonNull(baseData); in create()
295 return baseData.featureType.create(baseData); in create()
523 return baseData.geneId; in getGeneId()
531 return baseData.geneType; in getGeneType()
535 return baseData.geneName; in getGeneName()
547 return baseData.geneStatus; in getGeneStatus()
559 return baseData.exonId; in getExonId()
594 return (baseData.featureOrderNumber - other.baseData.featureOrderNumber); in compareTo()
609 isEqual = Objects.equals(baseData, thatFeature.baseData); in equals()
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H A DGencodeGtfCDSFeature.java22 private GencodeGtfCDSFeature(final GencodeGtfFeatureBaseData baseData) { in GencodeGtfCDSFeature() argument
23 super(baseData); in GencodeGtfCDSFeature()
26 public static GencodeGtfFeature create(final GencodeGtfFeatureBaseData baseData) { in create() argument
27 return new GencodeGtfCDSFeature(baseData); in create()
H A DGencodeGtfSelenocysteineFeature.java22 private GencodeGtfSelenocysteineFeature(final GencodeGtfFeatureBaseData baseData) { in GencodeGtfSelenocysteineFeature() argument
23 super(baseData); in GencodeGtfSelenocysteineFeature()
26 public static GencodeGtfFeature create(final GencodeGtfFeatureBaseData baseData) { in create() argument
27 return new GencodeGtfSelenocysteineFeature(baseData); in create()
H A DGencodeGtfStartCodonFeature.java22 private GencodeGtfStartCodonFeature(final GencodeGtfFeatureBaseData baseData) { in GencodeGtfStartCodonFeature() argument
23 super(baseData); in GencodeGtfStartCodonFeature()
26 public static GencodeGtfFeature create(final GencodeGtfFeatureBaseData baseData) { in create() argument
27 return new GencodeGtfStartCodonFeature(baseData); in create()
H A DGencodeGtfStopCodonFeature.java22 private GencodeGtfStopCodonFeature(final GencodeGtfFeatureBaseData baseData) { in GencodeGtfStopCodonFeature() argument
23 super(baseData); in GencodeGtfStopCodonFeature()
26 public static GencodeGtfFeature create(final GencodeGtfFeatureBaseData baseData) { in create() argument
27 return new GencodeGtfStopCodonFeature(baseData); in create()
/dports/graphics/quesa/quesa-1.8/Source/FileFormats/Readers/3DMF/
H A DE3FFR_3DMF_Bin.c66 (_data)->MFData.baseData.noMoreObjects = (TQ3Boolean) \
67 … (((_data)->MFData.baseData.currentStoragePosition + 8) > (_data)->MFData.baseData.logicalEOF); \
441 >= instanceData->MFData.baseData.logicalEOF){
475 instanceData->MFData.baseData.readInGroup = kQ3True;
476 instanceData->MFData.baseData.groupDeepCounter = 0;
485 if(instanceData->MFData.baseData.logicalEOF <= 24)
488 instanceData->MFData.baseData.currentStoragePosition = 0;
492 instanceData->MFData.baseData.byteOrder = kQ3EndianBig;
499 instanceData->MFData.baseData.byteOrder = kQ3EndianBig;
827 … instanceData->MFData.baseData.currentStoragePosition = instanceData->MFData.baseData.logicalEOF;
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H A DE3FFR_3DMF_Text.c73 (_data)->MFData.baseData.noMoreObjects = (TQ3Boolean) \
74 … (((_data)->MFData.baseData.currentStoragePosition + 6) >= (_data)->MFData.baseData.logicalEOF); \
169 …format->instanceData.MFData.baseData.currentStoragePosition < format->instanceData.MFData.baseData…
172 …result = dataRead( format->instanceData.MFData.baseData.storage, format->instanceData.MFData.baseD…
848 …(instanceData->MFData.baseData.currentStoragePosition < instanceData->MFData.baseData.logicalEOF) )
852 …result = dataRead(instanceData->MFData.baseData.storage, instanceData->MFData.baseData.currentStor…
987 format->instanceData.MFData.baseData.readInGroup = kQ3True;
988 format->instanceData.MFData.baseData.groupDeepCounter = 0;
993 if(format->instanceData.MFData.baseData.logicalEOF <= 24)
1189 format->instanceData.MFData.baseData.groupDeepCounter++;
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/dports/devel/icu/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/devel/icu-lx/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/www/firefox-esr/firefox-91.8.0/intl/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/lang/v8/v8-9.6.180.12/third_party/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/textproc/R-cran-stringi/stringi/src/icu55/i18n/
H A Dcollationdatareader.cpp111 if(baseData == NULL) { in read()
153 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
165 data->base = baseData; in read()
171 } else if(baseData != NULL) { in read()
173 tailoring.data = baseData; in read()
212 } else if(baseData != NULL) { in read()
264 if(baseData == NULL) { in read()
316 } else if(baseData != NULL) { in read()
341 } else if(baseData != NULL) { in read()
377 } else if(baseData != NULL) { in read()
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/dports/lang/spidermonkey78/firefox-78.9.0/intl/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/textproc/R-cran-stringi/stringi/src/icu69/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/www/firefox/firefox-99.0/intl/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/mail/thunderbird/thunderbird-91.8.0/intl/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/www/firefox-legacy/firefox-52.8.0esr/intl/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
[all …]
/dports/lang/spidermonkey60/firefox-60.9.0/intl/icu/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/www/node10/node-v10.24.1/deps/icu-small/source/i18n/
H A Dcollationdatareader.cpp114 if(baseData == NULL) { in read()
156 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
168 data->base = baseData; in read()
174 } else if(baseData != NULL) { in read()
176 tailoring.data = baseData; in read()
215 } else if(baseData != NULL) { in read()
267 if(baseData == NULL) { in read()
329 } else if(baseData != NULL) { in read()
354 } else if(baseData != NULL) { in read()
390 } else if(baseData != NULL) { in read()
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/dports/databases/mongodb36/mongodb-src-r3.6.23/src/third_party/icu4c-57.1/source/i18n/
H A Dcollationdatareader.cpp112 if(baseData == NULL) { in read()
154 if(baseData != NULL && baseData->numericPrimary != (inIndexes[IX_OPTIONS] & 0xff000000)) { in read()
166 data->base = baseData; in read()
172 } else if(baseData != NULL) { in read()
174 tailoring.data = baseData; in read()
213 } else if(baseData != NULL) { in read()
265 if(baseData == NULL) { in read()
327 } else if(baseData != NULL) { in read()
352 } else if(baseData != NULL) { in read()
388 } else if(baseData != NULL) { in read()
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/dports/devel/spark/spark-2.1.1/core/src/main/scala/org/apache/spark/ui/
H A DUIWorkloadGenerator.scala65 val baseData = sc.makeRDD(1 to NUM_PARTITIONS * 10, NUM_PARTITIONS) constant
69 ("Count", baseData.count),
70 ("Cache and Count", baseData.map(x => x).cache().count),
71 ("Single Shuffle", baseData.map(x => (x % 10, x)).reduceByKey(_ + _).count),
72 ("Entirely failed phase", baseData.map(x => throw new Exception).count),
74 baseData.map{x =>
83 baseData.map{x =>
92 ("Job with delays", baseData.map(x => Thread.sleep(100)).count)
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/
H A DGeneExpressionEvaluation.java263 String getValue(final Gff3BaseData baseData) { in getValue() argument
264 return baseData.getName(); in getValue()
269 String getValue(final Gff3BaseData baseData) { in getValue() argument
270 return baseData.getId(); in getValue()
281 abstract String getValue(final Gff3BaseData baseData); in getValue() argument
448 private Gff3BaseData shrinkBaseData(final Gff3BaseData baseData) { in shrinkBaseData() argument
451 …baseData.getContig(), baseData.getSource(), baseData.getType(), baseData.getStart(), baseData.getE… in shrinkBaseData()
596 .set("start", fragmentCount.baseData.getStart()) in composeLine()
597 .set("stop", fragmentCount.baseData.getEnd()) in composeLine()
645 public final Gff3BaseData baseData; field in GeneExpressionEvaluation.SingleStrandFeatureCoverage
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/dports/math/octave-forge-level-set/level-set/inst/
H A Dso_step_armijo.m222 %! baseData = struct ();
226 %! baseData.s = updateState (phi, baseData);
255 %! data = baseData;
259 %! data = baseData;
263 %! data = baseData;
267 %! data = baseData;
271 %! data = baseData;
275 %! data = baseData;
279 %! data = baseData;
286 %! data = baseData;
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