| /dports/biology/jalview/jalview/src/jalview/ws/jws2/ |
| H A D | RNAalifoldClient.java | 234 LinkedHashMap<Range, Float> basePairs = new LinkedHashMap<Range, Float>(); in constructAnnotationFromScoreHolder() local
239 basePairs.put(score.getRanges().first(), in constructAnnotationFromScoreHolder()
254 LinkedHashMap<Range, Float> contacts = isContact(basePairs, i + 1); in constructAnnotationFromScoreHolder()
378 LinkedHashMap<Range, Float> basePairs, int i) in isContact() argument
382 for (Range contact : basePairs.keySet()) in isContact()
389 contacts.put(contact, basePairs.get(contact)); in isContact()
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| /dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/ |
| H A D | GenomeLocParserUnitTest.java | 253 final int basePairs; field in GenomeLocParserUnitTest.FlankingGenomeLocTestData
256 …private FlankingGenomeLocTestData(String name, GenomeLocParser parser, int basePairs, String origi… in FlankingGenomeLocTestData() argument
259 this.basePairs = basePairs; in FlankingGenomeLocTestData()
337 GenomeLoc actual = data.parser.createGenomeLocAtStart(data.original, data.basePairs); in testCreateGenomeLocAtStart()
345 GenomeLoc actual = data.parser.createGenomeLocAtStop(data.original, data.basePairs); in testCreateGenomeLocAtStop()
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| /dports/databases/tile38/tile38-1.12.0/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 20 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
249 func basePairs(L *LState) int { func
|
| /dports/security/vault/vault-1.8.2/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/www/grafana8/grafana-8.3.6/vendor/github.com/cortexproject/cortex/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net-p2p/bitmark-recorder/bitmarkd-0.13.3/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net-p2p/bitmark-daemon/bitmarkd-0.13.3/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net-p2p/bitmark-cli/bitmarkd-0.13.3/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net-p2p/bitmark/bitmarkd-0.13.3/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/editors/micro/micro-2.0.10/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/www/grafana8/grafana-8.3.6/vendor/github.com/grafana/loki/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/www/oauth2-proxy/oauth2-proxy-7.2.0/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net/storj/storj-1.45.3/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/sysutils/istio/istio-1.6.7/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 21 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
252 func basePairs(L *LState) int { func
|
| /dports/net-mgmt/bosun/bosun-0.9.0-preview/vendor/github.com/siddontang/ledisdb/vendor/github.com/yuin/gopher-lua/ |
| H A D | baselib.go | 20 global.RawSetString("pairs", L.NewClosure(basePairs, L.NewFunction(pairsaux)))
249 func basePairs(L *LState) int { func
|
| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/ |
| H A D | IntervalUtils.java | 956 …ntervalsWithFlanks(final GenomeLocParser parser, final List<GenomeLoc> locs, final int basePairs) { in getIntervalsWithFlanks() argument
963 .map(loc -> parser.createPaddedGenomeLoc(loc, basePairs)) in getIntervalsWithFlanks()
978 … getIntervalsWithFlanks(final List<SimpleInterval> intervals, final int basePairs, final SAMSequen… in getIntervalsWithFlanks() argument
981 …ist<GenomeLoc> paddedGenomeLocs = getIntervalsWithFlanks(parser, intervalsAsGenomeLocs, basePairs); in getIntervalsWithFlanks()
|
| /dports/science/jmol/jmol-14.32.7/src/org/jmol/viewer/ |
| H A D | Jmol.properties | 10910 basePairs key
10962 basePairs key
10963 basePairs.19.DSSR
10964 basePairs.19.LW
10966 basePairs.19.bp
10967 basePairs.19.id
10968 basePairs.19.info
10969 basePairs.19.name
10970 basePairs.19.nt1
10971 basePairs.19.nt2
[all …]
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