Searched refs:base_ignored_head_tail (Results 1 – 2 of 2) sorted by relevance
268 …o, chromosome_t * known_chromosomes, int is_sequence_needed, int base_ignored_head_tail, gene_valu…
2016 while(insertion_cursor < insertion_end && read_cursor < (rl - base_ignored_head_tail)) in break_SAM_file()2025 if(base_ignored_head_tail) in break_SAM_file()2027 if(read_cursor+insert_length < base_ignored_head_tail) in break_SAM_file()2029 else if(read_cursor < base_ignored_head_tail) in break_SAM_file()2031 int ignored_length = base_ignored_head_tail - read_cursor; in break_SAM_file()2032 insert_length = read_cursor + insert_length - base_ignored_head_tail; in break_SAM_file()2034 read_cursor = base_ignored_head_tail; in break_SAM_file()2038 if(read_cursor >= (rl - base_ignored_head_tail)) in break_SAM_file()2040 else if(read_cursor +insert_length >= (rl - base_ignored_head_tail)) in break_SAM_file()2041 insert_length = (rl - base_ignored_head_tail) - read_cursor; in break_SAM_file()[all …]