Searched refs:basepairSubstMtrx_ (Results 1 – 1 of 1) sorted by relevance
811 double basepairSubstMtrx_[4][4][4][4]; variable824 return basepairSubstMtrx_[i][j][k][l]+down+over; in replacepair()896 basepairSubstMtrx_[i][j][k][l]=-1000; in RIBOSUM8560()931 basepairSubstMtrx_[i][j][k][l] = basepairSubstMtrx_[k][l][i][j]; in RIBOSUM8560()953 return s_.bp_indel_score_ + basepairSubstMtrx_[i][j][k][l] + mdown + over; in deletePairOnly()1002 return s_.bp_indel_score_ + basepairSubstMtrx_[i][j][k][l] + mdown + over; in insertPairOnly()1044 double basepairSubstMtrx_[4][4][4][4]; variable1056 return basepairSubstMtrx_[i][j][k][l]+down+over; in replacepair()1128 basepairSubstMtrx_[i][j][k][l]=-1000; in AffineRIBOSUM8560()1163 basepairSubstMtrx_[i][j][k][l]=basepairSubstMtrx_[k][l][i][j]; in AffineRIBOSUM8560()[all …]