/dports/biology/bcftools/bcftools-1.14/ |
H A D | mpileup.c | 99 bcf_hdr_t *bcf_hdr; member 732 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup() 738 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 744 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 751 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 760 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 831 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup() 836 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup() 851 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup() 926 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup() [all …]
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H A D | bam2bcf.h | 129 bcf_hdr_t *bcf_hdr; member
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H A D | bam2bcf.c | 981 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | mpileup.c | 99 bcf_hdr_t *bcf_hdr; member 732 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup() 738 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 744 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 751 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 760 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 831 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup() 836 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup() 851 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup() 926 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup() [all …]
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H A D | bam2bcf.h | 129 bcf_hdr_t *bcf_hdr; member
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H A D | bam2bcf.c | 981 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | mpileup.c | 99 bcf_hdr_t *bcf_hdr; member 732 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup() 738 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 744 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 751 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 760 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 831 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup() 836 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup() 851 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup() 926 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup() [all …]
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H A D | mpileup.c.pysam.c | 101 bcf_hdr_t *bcf_hdr; member 734 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup() 740 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 746 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 753 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 762 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup() 833 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup() 838 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup() 853 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup() 928 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup() [all …]
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H A D | bam2bcf.h | 129 bcf_hdr_t *bcf_hdr; member
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H A D | bam2bcf.c | 981 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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H A D | bam2bcf.c.pysam.c | 983 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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/dports/biology/py-pysam/pysam-0.18.0/samtools/ |
H A D | bam_plcmd.c | 495 bcf_hdr_t *bcf_hdr = NULL; in mpileup() local 615 bcf_hdr = bcf_hdr_init("w"); in mpileup() 619 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 625 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 631 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 640 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 690 bcf_hdr_add_sample(bcf_hdr, sm->smpl[i]); in mpileup() 691 bcf_hdr_add_sample(bcf_hdr, NULL); in mpileup() 692 if (bcf_hdr_write(bcf_fp, bcf_hdr) != 0) { in mpileup() 708 bc.bcf_hdr = bcf_hdr; in mpileup() [all …]
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H A D | bam_plcmd.c.pysam.c | 497 bcf_hdr_t *bcf_hdr = NULL; in mpileup() local 617 bcf_hdr = bcf_hdr_init("w"); in mpileup() 621 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 627 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 633 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 642 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 692 bcf_hdr_add_sample(bcf_hdr, sm->smpl[i]); in mpileup() 693 bcf_hdr_add_sample(bcf_hdr, NULL); in mpileup() 694 if (bcf_hdr_write(bcf_fp, bcf_hdr) != 0) { in mpileup() 710 bc.bcf_hdr = bcf_hdr; in mpileup() [all …]
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H A D | bam2bcf.h | 104 bcf_hdr_t *bcf_hdr; member
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H A D | bam2bcf.c | 682 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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H A D | bam2bcf.c.pysam.c | 684 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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/dports/biology/samtools/samtools-1.14/ |
H A D | bam_plcmd.c | 495 bcf_hdr_t *bcf_hdr = NULL; in mpileup() local 615 bcf_hdr = bcf_hdr_init("w"); in mpileup() 619 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 625 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 631 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 640 bcf_hdr_append(bcf_hdr, str.s); in mpileup() 690 bcf_hdr_add_sample(bcf_hdr, sm->smpl[i]); in mpileup() 691 bcf_hdr_add_sample(bcf_hdr, NULL); in mpileup() 692 if (bcf_hdr_write(bcf_fp, bcf_hdr) != 0) { in mpileup() 708 bc.bcf_hdr = bcf_hdr; in mpileup() [all …]
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H A D | bam2bcf.h | 104 bcf_hdr_t *bcf_hdr; member
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H A D | bam2bcf.c | 682 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
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