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Searched refs:bcf_hdr (Results 1 – 19 of 19) sorted by relevance

/dports/biology/bcftools/bcftools-1.14/
H A Dmpileup.c99 bcf_hdr_t *bcf_hdr; member
732 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup()
738 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
744 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
751 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
760 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
831 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup()
836 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup()
851 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup()
926 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup()
[all …]
H A Dbam2bcf.h129 bcf_hdr_t *bcf_hdr; member
H A Dbam2bcf.c981 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
/dports/biology/bio-mocha/bcftools-1.14/
H A Dmpileup.c99 bcf_hdr_t *bcf_hdr; member
732 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup()
738 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
744 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
751 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
760 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
831 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup()
836 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup()
851 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup()
926 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup()
[all …]
H A Dbam2bcf.h129 bcf_hdr_t *bcf_hdr; member
H A Dbam2bcf.c981 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dmpileup.c99 bcf_hdr_t *bcf_hdr; member
732 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup()
738 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
744 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
751 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
760 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
831 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup()
836 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup()
851 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup()
926 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup()
[all …]
H A Dmpileup.c.pysam.c101 bcf_hdr_t *bcf_hdr; member
734 conf->bcf_hdr = bcf_hdr_init("w"); in mpileup()
740 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
746 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
753 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
762 bcf_hdr_append(conf->bcf_hdr, conf->buf.s); in mpileup()
833 gvcf_update_header(conf->gvcf, conf->bcf_hdr); in mpileup()
838 bcf_hdr_add_sample(conf->bcf_hdr, smpl[i]); in mpileup()
853 conf->bc.bcf_hdr = conf->bcf_hdr; in mpileup()
928 flush_bcf_records(conf, conf->bcf_fp, conf->bcf_hdr, NULL); in mpileup()
[all …]
H A Dbam2bcf.h129 bcf_hdr_t *bcf_hdr; member
H A Dbam2bcf.c981 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
H A Dbam2bcf.c.pysam.c983 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
/dports/biology/py-pysam/pysam-0.18.0/samtools/
H A Dbam_plcmd.c495 bcf_hdr_t *bcf_hdr = NULL; in mpileup() local
615 bcf_hdr = bcf_hdr_init("w"); in mpileup()
619 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
625 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
631 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
640 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
690 bcf_hdr_add_sample(bcf_hdr, sm->smpl[i]); in mpileup()
691 bcf_hdr_add_sample(bcf_hdr, NULL); in mpileup()
692 if (bcf_hdr_write(bcf_fp, bcf_hdr) != 0) { in mpileup()
708 bc.bcf_hdr = bcf_hdr; in mpileup()
[all …]
H A Dbam_plcmd.c.pysam.c497 bcf_hdr_t *bcf_hdr = NULL; in mpileup() local
617 bcf_hdr = bcf_hdr_init("w"); in mpileup()
621 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
627 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
633 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
642 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
692 bcf_hdr_add_sample(bcf_hdr, sm->smpl[i]); in mpileup()
693 bcf_hdr_add_sample(bcf_hdr, NULL); in mpileup()
694 if (bcf_hdr_write(bcf_fp, bcf_hdr) != 0) { in mpileup()
710 bc.bcf_hdr = bcf_hdr; in mpileup()
[all …]
H A Dbam2bcf.h104 bcf_hdr_t *bcf_hdr; member
H A Dbam2bcf.c682 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
H A Dbam2bcf.c.pysam.c684 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()
/dports/biology/samtools/samtools-1.14/
H A Dbam_plcmd.c495 bcf_hdr_t *bcf_hdr = NULL; in mpileup() local
615 bcf_hdr = bcf_hdr_init("w"); in mpileup()
619 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
625 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
631 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
640 bcf_hdr_append(bcf_hdr, str.s); in mpileup()
690 bcf_hdr_add_sample(bcf_hdr, sm->smpl[i]); in mpileup()
691 bcf_hdr_add_sample(bcf_hdr, NULL); in mpileup()
692 if (bcf_hdr_write(bcf_fp, bcf_hdr) != 0) { in mpileup()
708 bc.bcf_hdr = bcf_hdr; in mpileup()
[all …]
H A Dbam2bcf.h104 bcf_hdr_t *bcf_hdr; member
H A Dbam2bcf.c682 bcf_hdr_t *hdr = bc->bcf_hdr; in bcf_call2bcf()