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Searched refs:bcf_hdr_append_info_with_backup_naming (Results 1 – 12 of 12) sorted by relevance

/dports/biology/vt/vt-0.57721/
H A Dannotate_indels.cpp188 …EX_MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_MOTIF", "1", "String", "Canonical … in initialize()
189 …EX_RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_RU", "1", "String", "Repeat unit in t… in initialize()
190 …EX_BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_BASIS", "1", "String", "Basis nucl… in initialize()
191 …EX_MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_MLEN", "1", "Integer", "Motif lengt… in initialize()
192 …EX_BLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_BLEN", "1", "Integer", "Basis lengt… in initialize()
201 …EX_LL = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_LL", "1", "Integer", "Longest exact r… in initialize()
207 …FZ_MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_MOTIF", "1", "String", "Canonical … in initialize()
208 …FZ_RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_RU", "1", "String", "Repeat unit in t… in initialize()
209 …FZ_BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_BASIS", "1", "String", "Basis nucl… in initialize()
210 …FZ_MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_MLEN", "1", "Integer", "Motif lengt… in initialize()
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H A Dannotate_indels2.cpp188 …EX_MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_MOTIF", "1", "String", "Canonical … in initialize()
189 …EX_RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_RU", "1", "String", "Repeat unit in t… in initialize()
190 …EX_BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_BASIS", "1", "String", "Basis nucl… in initialize()
191 …EX_MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_MLEN", "1", "Integer", "Motif lengt… in initialize()
192 …EX_BLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_BLEN", "1", "Integer", "Basis lengt… in initialize()
201 …EX_LL = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_LL", "1", "Integer", "Longest exact r… in initialize()
207 …FZ_MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_MOTIF", "1", "String", "Canonical … in initialize()
208 …FZ_RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_RU", "1", "String", "Repeat unit in t… in initialize()
209 …FZ_BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_BASIS", "1", "String", "Basis nucl… in initialize()
210 …FZ_MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_MLEN", "1", "Integer", "Motif lengt… in initialize()
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H A Dmerge_genotypes.cpp142 …std::string EX_MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_MOTIF", "1", "String",… in initialize()
143 …std::string EX_RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_RU", "1", "String", "Repe… in initialize()
144 …std::string EX_BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_BASIS", "1", "String",… in initialize()
145 …std::string EX_MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_MLEN", "1", "Integer", … in initialize()
146 …std::string EX_BLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "EX_BLEN", "1", "Integer", … in initialize()
161 …std::string FZ_MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_MOTIF", "1", "String",… in initialize()
163 …std::string FZ_BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_BASIS", "1", "String",… in initialize()
164 …std::string FZ_MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_MLEN", "1", "Integer", … in initialize()
165 …std::string FZ_BLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_BLEN", "1", "Integer", … in initialize()
182 …std::string MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "MOTIF", "1", "String", "Cano… in initialize()
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H A Dannotate_vntrs.cpp159 …END = bcf_hdr_append_info_with_backup_naming(odw->hdr, "END", "1", "Integer", "End position of the… in initialize()
160 …MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "MOTIF", "1", "String", "Canonical motif … in initialize()
161 …RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "RU", "1", "String", "Repeat unit in the ref… in initialize()
162 …BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "BASIS", "1", "String", "Basis nucleotide… in initialize()
163 …MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "MLEN", "1", "Integer", "Motif length.", r… in initialize()
164 …BLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "BLEN", "1", "Integer", "Basis length.", r… in initialize()
168 …COMP = bcf_hdr_append_info_with_backup_naming(odw->hdr, "COMP", "4", "Integer", "Composition(%) of… in initialize()
169 …ENTROPY = bcf_hdr_append_info_with_backup_naming(odw->hdr, "ENTROPY", "1", "Float", "Entropy measu… in initialize()
171 …RL = bcf_hdr_append_info_with_backup_naming(odw->hdr, "RL", "1", "Integer", "Reference exact repea… in initialize()
173 …SCORE = bcf_hdr_append_info_with_backup_naming(odw->hdr, "SCORE", "1", "Float", "Score of repeat u… in initialize()
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H A Dvntr_extractor.cpp59 …END = bcf_hdr_append_info_with_backup_naming(odw->hdr, "END", "1", "Integer", "End position of the… in VNTRExtractor()
60 …MOTIF = bcf_hdr_append_info_with_backup_naming(odw->hdr, "MOTIF", "1", "String", "Canonical motif … in VNTRExtractor()
61 …RU = bcf_hdr_append_info_with_backup_naming(odw->hdr, "RU", "1", "String", "Repeat unit in the ref… in VNTRExtractor()
62 …BASIS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "BASIS", "1", "String", "Basis nucleotide… in VNTRExtractor()
63 …MLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "MLEN", "1", "Integer", "Motif length.", r… in VNTRExtractor()
64 …BLEN = bcf_hdr_append_info_with_backup_naming(odw->hdr, "BLEN", "1", "Integer", "Basis length.", r… in VNTRExtractor()
66 …COMP = bcf_hdr_append_info_with_backup_naming(odw->hdr, "COMP", "4", "Integer", "Composition(%) of… in VNTRExtractor()
67 …ENTROPY = bcf_hdr_append_info_with_backup_naming(odw->hdr, "ENTROPY", "1", "Float", "Entropy measu… in VNTRExtractor()
71 …RL = bcf_hdr_append_info_with_backup_naming(odw->hdr, "RL", "1", "Integer", "Reference exact repea… in VNTRExtractor()
72 …LL = bcf_hdr_append_info_with_backup_naming(odw->hdr, "LL", "1", "Integer", "Longest exact repeat … in VNTRExtractor()
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H A Dgenotype.cpp180 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "MOTIF", "1", "String", "Canonical motif in an VN… in Igor()
181 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "RU", "1", "String", "Repeat unit in a VNTR or ho… in Igor()
183 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "RL", "1", "Float", "Reference repeat unit length… in Igor()
184 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "LL", "1", "Float", "Longest repeat unit length",… in Igor()
185 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "CONCORDANCE", "1", "Float", "Concordance of repe… in Igor()
186 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "RU_COUNTS", "2", "Integer", "Number of exact rep… in Igor()
189 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_RL", "1", "Float", "Fuzzy reference repeat un… in Igor()
190 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_LL", "1", "Float", "Fuzzy longest repeat unit… in Igor()
191 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_CONCORDANCE", "1", "Float", "Fuzzy concordanc… in Igor()
192 …bcf_hdr_append_info_with_backup_naming(odw->hdr, "FZ_RU_COUNTS", "2", "Integer", "Fuzzy number of … in Igor()
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H A Dordered_bcf_overlap_matcher.cpp32 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "EXACT_OVERLAPS", "1", "Integer", "Number of exac… in OrderedBCFOverlapMatcher()
33 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "FUZZY_OVERLAPS", "1", "Integer", "Number of fuzz… in OrderedBCFOverlapMatcher()
50 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "EXACT_OVERLAPS", "1", "Integer", "Number of exac… in OrderedBCFOverlapMatcher()
51 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "FUZZY_OVERLAPS", "1", "Integer", "Number of fuzz… in OrderedBCFOverlapMatcher()
H A Dmultiallelics_consolidator.cpp55 …END = bcf_hdr_append_info_with_backup_naming(odw->hdr, "END", "1", "Integer", "End position of the… in MultiallelicsConsolidator()
56 …MERGED_NEW_MULTIALLELIC_VARIANT = bcf_hdr_append_info_with_backup_naming(odw->hdr, "MERGED_NEW_MUL… in MultiallelicsConsolidator()
57 …CONSTITUENT_VARIANTS = bcf_hdr_append_info_with_backup_naming(odw->hdr, "CONSTITUENT_VARIANTS", ".… in MultiallelicsConsolidator()
H A Dfuzzy_partition.cpp150 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "EXACT_OVERLAPS", "1", "Integer", "Number of exac… in initialize()
151 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "FUZZY_OVERLAPS", "1", "Integer", "Number of fuzz… in initialize()
152 …bcf_hdr_append_info_with_backup_naming(odr->hdr, "OVERLAPPING_VARIANTS", ".", "String", "Overlappi… in initialize()
H A Dprofile_na12878.cpp335 …dataset_info_site_tags.push_back(bcf_hdr_append_info_with_backup_naming(odw->hdr, info_tag, "1", "… in initialize()
341 …dataset_info_gt_tags.push_back(bcf_hdr_append_info_with_backup_naming(odw->hdr, info_tag, "1", "St… in initialize()
H A Dhts_utils.h303 std::string bcf_hdr_append_info_with_backup_naming(bcf_hdr_t *h, std::string tag, std::string numbe…
H A Dhts_utils.cpp743 std::string bcf_hdr_append_info_with_backup_naming(bcf_hdr_t *h, std::string tag, std::string numbe… in bcf_hdr_append_info_with_backup_naming() function