Searched refs:bedRecord (Results 1 – 11 of 11) sorted by relevance
125 CBedGraphRecord bedRecord; in xWriteAnnotSeqTable() local229 bedRecord.Write(m_Os); in xWriteAnnotSeqTable()313 CBedGraphRecord bedRecord; in xWriteSingleFeature() local345 bedRecord.SetChromId(recordId); in xWriteSingleFeature()350 bedRecord.Write(m_Os); in xWriteSingleFeature()367 CBedGraphRecord bedRecord; in xWriteSingleGraphInt() local388 bedRecord.Write(m_Os); in xWriteSingleGraphInt()406 CBedGraphRecord bedRecord; in xWriteSingleGraphByte() local427 bedRecord.Write(m_Os); in xWriteSingleGraphByte()446 CBedGraphRecord bedRecord; in xWriteSingleGraphReal() local[all …]
158 CBedFeatureRecord& bedRecord) const in GetBedFeature()161 bedRecord = CBedFeatureRecord(); in GetBedFeature()175 if (!bedRecord.SetScore(score)) { in GetBedFeature()190 if (!bedRecord.SetRgb(color)) { in GetBedFeature()195 if (!bedRecord.SetBlocks( in GetBedFeature()305 CBedFeatureRecord& bedRecord) in ProcessRecord() argument312 if (!it->GetBedFeature(bedRecord)) { in ProcessRecord()322 CBedFeatureRecord& bedRecord) in GetAnyRecord() argument329 if (!it->GetBedFeature(bedRecord)) { in GetAnyRecord()498 CBedFeatureRecord bedRecord; in xWriteAnnotThreeFeatData() local[all …]
52 if (bedRecord.ref != ref) in pushBed()54 ref = bedRecord.ref; in pushBed()57 bedRecords.push_back(bedRecord); in pushBed()67 roiRecord.ref = bedRecord.ref; in writeEmptyBed()71 roiRecord.name = bedRecord.name; in writeEmptyBed()145 int beginPos = bedRecord.beginPos; in processFirstBedRecord()146 int endPos = bedRecord.endPos; in processFirstBedRecord()268 for (int pos = bedRecord.beginPos; pos != bedRecord.endPos; ++pos) in updateConnectivity()276 if (pos >= bedRecord.beginPos && pos < bedRecord.endPos) in updateConnectivity()311 … appendValue(pairs, TIntPair(bedRecord.beginPos - beginPos, bedRecord.endPos - beginPos)); in writeRois()[all …]
220 clear(bedRecord); in readRecord()221 bedRecord.ref = gffRecord.ref; in readRecord()224 bedRecord.score = "0"; in readRecord()230 …ss << "ggf_" << (gffID++) << "_" << bedRecord.ref << ":" << bedRecord.beginPos << "-" << bedRecord… in readRecord()231 bedRecord.name = ss.str(); in readRecord()236 makeSentinel(bedRecord); in readRecord()274 seqan::BedRecord<seqan::Bed6> bedRecord; member in IntersectDriver298 config.readRecord(bedRecord); in run()347 if (ltRecord(bedRecord, roiRecord)) in run()353 clear(bedRecord); in run()[all …]
113 void pushBed(TBedRecord const & bedRecord);130 seqan::BedRecord<seqan::Bed6> const & bedRecord,138 seqan::BedRecord<seqan::Bed6> const & bedRecord);141 void writeEmptyBed(seqan::BedRecord<seqan::Bed6> const & bedRecord);
51 bedRecord::bedRecord() { in bedRecord() function66 bedRecord::bedRecord(char *inLine) { in bedRecord() function71 bedRecord::~bedRecord() { in ~bedRecord()78 bedRecord::load(char *inLine) { in load()102 bedRecord::save(FILE *outFile) { in save()129 _records.push_back(new bedRecord(L)); in loadFile()
27 class bedRecord {29 bedRecord();30 bedRecord(char *inLine);31 ~bedRecord();60 std::vector<bedRecord *> _records;
466 checkRecord(bedRecord *record, in checkRecord()711 bedRecord *record = bed->_records[ii]; in processBED()
1194 BedRecord<Bed6> bedRecord; in writeMeth() local1198 bedRecord.name = "."; in writeMeth()1204 bedRecord.score = str; in writeMeth()1208 bedRecord.strand = '+'; in writeMeth()1213 bedRecord.data = str; in writeMeth()1215 bedRecord.strand = '-'; in writeMeth()1220 bedRecord.data = str; in writeMeth()1257 bedRecord.strand = '+'; in writeMeth()1262 bedRecord.data = str; in writeMeth()1283 bedRecord.strand = '-'; in writeMeth()[all …]
974 seqan::BedRecord<seqan::Bed6> bedRecord; in detectSNPs() local977 readRecord(bedRecord, bedFileIn); in detectSNPs()978 writeRecord(bedFileOut, bedRecord); in detectSNPs()
143 :fragment: bedRecord