Searched refs:bed_itr (Results 1 – 7 of 7) sorted by relevance
| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam_ampliconclip.c | 81 khiter_t bed_itr; in load_bed_file_multi_ref() local
119 bed_itr = kh_get(bed_list_hash, bed_lists, ref); in load_bed_file_multi_ref()
121 if (bed_itr == kh_end(bed_lists)) { // new ref entry in load_bed_file_multi_ref()
130 bed_itr = kh_put(bed_list_hash, bed_lists, ref_name, &hret); in load_bed_file_multi_ref()
133 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
146 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
186 for (bed_itr = kh_begin(bed_lists); bed_itr != kh_end(bed_lists); ++bed_itr) { in load_bed_file_multi_ref()
187 if (kh_exist(bed_lists, bed_itr)) { in load_bed_file_multi_ref()
188 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
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| H A D | bam_ampliconclip.c.pysam.c | 83 khiter_t bed_itr; in load_bed_file_multi_ref() local
121 bed_itr = kh_get(bed_list_hash, bed_lists, ref); in load_bed_file_multi_ref()
123 if (bed_itr == kh_end(bed_lists)) { // new ref entry in load_bed_file_multi_ref()
132 bed_itr = kh_put(bed_list_hash, bed_lists, ref_name, &hret); in load_bed_file_multi_ref()
135 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
148 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
188 for (bed_itr = kh_begin(bed_lists); bed_itr != kh_end(bed_lists); ++bed_itr) { in load_bed_file_multi_ref()
189 if (kh_exist(bed_lists, bed_itr)) { in load_bed_file_multi_ref()
190 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam_ampliconclip.c | 81 khiter_t bed_itr; in load_bed_file_multi_ref() local
119 bed_itr = kh_get(bed_list_hash, bed_lists, ref); in load_bed_file_multi_ref()
121 if (bed_itr == kh_end(bed_lists)) { // new ref entry in load_bed_file_multi_ref()
130 bed_itr = kh_put(bed_list_hash, bed_lists, ref_name, &hret); in load_bed_file_multi_ref()
133 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
146 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
186 for (bed_itr = kh_begin(bed_lists); bed_itr != kh_end(bed_lists); ++bed_itr) { in load_bed_file_multi_ref()
187 if (kh_exist(bed_lists, bed_itr)) { in load_bed_file_multi_ref()
188 list = &kh_val(bed_lists, bed_itr); in load_bed_file_multi_ref()
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | mpileup.c | 80 regitr_t *bed_itr, *reg_itr; member
205 regitr_t *itr = ma->conf->bed_itr; in mplp_func()
1323 mplp.bed_itr = regitr_init(mplp.bed); in main_mpileup()
1512 if (mplp.bed_itr) regitr_destroy(mplp.bed_itr); in main_mpileup()
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | mpileup.c | 80 regitr_t *bed_itr, *reg_itr; member
205 regitr_t *itr = ma->conf->bed_itr; in mplp_func()
1323 mplp.bed_itr = regitr_init(mplp.bed); in main_mpileup()
1512 if (mplp.bed_itr) regitr_destroy(mplp.bed_itr); in main_mpileup()
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | mpileup.c | 80 regitr_t *bed_itr, *reg_itr; member
205 regitr_t *itr = ma->conf->bed_itr; in mplp_func()
1323 mplp.bed_itr = regitr_init(mplp.bed); in main_mpileup()
1512 if (mplp.bed_itr) regitr_destroy(mplp.bed_itr); in main_mpileup()
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| H A D | mpileup.c.pysam.c | 82 regitr_t *bed_itr, *reg_itr; member
207 regitr_t *itr = ma->conf->bed_itr; in mplp_func()
1325 mplp.bed_itr = regitr_init(mplp.bed); in main_mpileup()
1514 if (mplp.bed_itr) regitr_destroy(mplp.bed_itr); in main_mpileup()
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