Searched refs:best_stop (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | score.cpp | 1187 …IVec starts[3], TIVec stops[3], int& best_frame, int& best_start, int& best_stop, bool extend5p) … in SelectBestReadingFrame() argument
1302 best_stop = -1; in SelectBestReadingFrame()
1377 best_stop = stop; in SelectBestReadingFrame()
1499 int best_start, best_stop; in GetScore() local
1500 …electBestReadingFrame(model, mrna, mrnamap, starts, stops, frame, best_start, best_stop, extend5p); in GetScore()
1516 int newlen = best_stop-new_start; in GetScore()
1517 int oldlen = best_stop-best_start; in GetScore()
1532 TSignedSeqRange best_reading_frame = TSignedSeqRange(best_start+3,best_stop-1); in GetScore()
1554 if ((int)mrna.size() - best_stop >=3) in GetScore()
1555 cds_info.SetStop(TSignedSeqRange(best_stop,best_stop+2),confirmed_stop); in GetScore()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon.hpp | 90 …TIVec starts[3], TIVec stops[3], int& frame, int& best_start, int& best_stop, bool extend5p = tru…
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