/dports/biology/canu/canu-2.2/src/bogart/ |
H A D | AS_BAT_PlaceReadUsingOverlaps.C | 192 assert(op.position.bgn <= op.verified.bgn); in placeRead_fromOverlaps() 196 assert(op.verified.bgn <= op.position.bgn); in placeRead_fromOverlaps() 382 op.covered.bgn = std::min(op.covered.bgn, ovlPlace[oo].covered.bgn); in placeRead_computePlacement() 400 bgnVer2 = op.position.bgn + op.covered.bgn; in placeRead_computePlacement() 403 bgnVer2 = op.position.bgn - op.covered.bgn; in placeRead_computePlacement() 441 if (op.verified.bgn < op.position.bgn) op.verified.bgn = op.position.bgn; in placeRead_computePlacement() 444 if (op.verified.bgn > op.position.bgn) op.verified.bgn = op.position.bgn; in placeRead_computePlacement() 455 assert(op.position.bgn <= op.verified.bgn); in placeRead_computePlacement() 459 assert(op.verified.bgn <= op.position.bgn); in placeRead_computePlacement() 484 op.covered.bgn = std::min(op.covered.bgn, ovlPlace[oo].covered.bgn); in placeRead_computeCoverage() [all …]
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H A D | AS_BAT_Unitig.C | 39 frg->position.bgn = getLength() - frg->position.bgn; in reverseComplement() 414 while ((bgn < errorProfile[pb].bgn) || in overlapConsistentWithTig() 417 if (bgn < errorProfile[pb].bgn) in overlapConsistentWithTig() 430 uint32 pbi = bgn / 1000; in overlapConsistentWithTig() 436 while ((0 < pbi) && (errorProfile[errorProfileIndex[pbi]].bgn > bgn)) { in overlapConsistentWithTig() 459 while ((0 < pb) && (bgn < errorProfile[pb].bgn)) in overlapConsistentWithTig() 466 if ((errorProfile[pb].bgn > bgn) || in overlapConsistentWithTig() 469 bgn, end, pb, errorProfile[pb].bgn, errorProfile[pb].end); in overlapConsistentWithTig() 470 assert(errorProfile[pb].bgn <= bgn); in overlapConsistentWithTig() 492 uint32 bb = bgn - errorProfile[pb].bgn; in overlapConsistentWithTig() [all …]
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H A D | AS_BAT_Unitig.H | 41 bgn = 0; in SeqInterval() 55 return(((bgn == that.bgn) && (end == that.end)) || 56 ((bgn == that.end) && (end == that.bgn))); 60 return(((bgn != that.bgn) || (end != that.end)) && 61 ((bgn != that.end) || (end != that.bgn))); 143 position.bgn = bgn; 180 int32 abgn = (position.bgn < position.end) ? position.bgn : position.end; 181 int32 aend = (position.bgn < position.end) ? position.end : position.bgn; 285 bgn = b; in epValue() 292 bgn = b; in epValue() [all …]
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H A D | AS_BAT_Unitig_AddRead.C | 30 node.position.bgn += offset; in addRead() 39 int32 frgEnd = std::max(node.position.bgn, node.position.end); in addRead() 45 if ((report) || (node.position.bgn < 0) || (node.position.end < 0)) { in addRead() 47 …oslen = (node.position.end > node.position.bgn) ? (node.position.end - node.position.bgn) : (node.… in addRead() 51 node.ident, trulen, _id, node.position.bgn, node.position.end, in addRead() 57 node.ident, trulen, _id, node.position.bgn, node.position.end, in addRead() 65 assert(node.position.bgn >= 0); in addRead() 79 uint32 lastbgn = min(last.position.bgn, last.position.end); 82 (lastbgn < min(ufpath[previd].position.bgn, ufpath[previd].position.end))) {
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/dports/biology/canu/canu-2.2/src/utility/src/tests/ |
H A D | intervalsTest.C | 35 (t1.bgn(0) != 7) || (t1.end(0) != 11) || in boringTest() 36 (t1.bgn(1) != 0) || (t1.end(1) != 10) || in boringTest() 37 (t1.bgn(2) != 8) || (t1.end(2) != 20)); in boringTest() 48 (t1.bgn(0) != 0) || (t1.end(0) != 20)); in boringTest() 78 (t2.bgn(1) != -20) || (t2.end(1) != -5) || in invertTest() 127 uint32 end = bgn + len; in expensiveTest() 130 il.add_span(bgn, len); in expensiveTest() 132 il.add_position(bgn, end); in expensiveTest() 134 for (uint32 xx=bgn; xx<end; xx++) in expensiveTest() 147 uint32 bgn = de.bgn(xx); in expensiveTest() local [all …]
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/dports/converters/ytnef/ytnef-1.9.3/ytnef/ |
H A D | utility.c | 88 char *bgn = *str; in ConsumeHyperlink() local 90 bgn = strchr(bgn, '"'); in ConsumeHyperlink() 91 bgn++; in ConsumeHyperlink() 92 end = strchr(bgn, '"'); in ConsumeHyperlink() 95 strncpy(link, bgn, size); in ConsumeHyperlink() 100 bgn++; in ConsumeHyperlink() 101 if (*bgn == '\\') { in ConsumeHyperlink() 104 } else if (*bgn == ' ') { in ConsumeHyperlink() 117 if (*bgn != '}') { in ConsumeHyperlink() 118 end = strchr(bgn, '}'); in ConsumeHyperlink() [all …]
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/dports/biology/canu/canu-2.2/src/utility/src/utility/ |
H A D | kmers-lookup.H | 171 uint64 bgn = _suffixBgn[prefix]; in exists() local 179 while (bgn + 8 < end) { in exists() 180 mid = bgn + (end - bgn) / 2; in exists() 191 bgn = mid + 1; in exists() 196 for (mid=bgn; mid < end; mid++) { in exists() 225 while (bgn + 8 < end) { in exists() 226 mid = bgn + (end - bgn) / 2; in exists() 242 bgn = mid + 1; in exists() 280 while (bgn + 8 < end) { in value() 281 mid = bgn + (end - bgn) / 2; in value() [all …]
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H A D | intervals.H | 57 iNum bgn (uint32 idx) const { return(_list[idx]._bgn); }; in bgn() function 65 iNum &bgn (uint32 idx) { return(_list[idx]._bgn); }; in bgn() function 90 void add_position(iNum bgn, iNum end); 91 void add_span (iNum bgn, iNum len) { in add_span() argument 93 add_position(bgn+len, bgn); in add_span() 95 add_position(bgn, bgn+len); in add_span() 151 void setToUnion (iNum bgn, iNum end, intervals<iNum> const &A); 152 void setToIntersection(iNum bgn, iNum end, intervals<iNum> const &A); 159 void setToInversion1(iNum bgn, iNum end, intervals<iNum> const &A); 160 void setToInversion2(iNum bgn, iNum end, intervals<iNum> const &A); [all …]
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/dports/audio/julius/julius-4.1.2/libsent/src/anlz/ |
H A D | strip.c | 44 int bgn,mode,j; in strip_zero() local 47 bgn = 0; in strip_zero() 53 bgn = src; in strip_zero() 60 if ((src - bgn) < WINDOWLEN) { in strip_zero() 61 for(j=bgn;j<src;j++) { in strip_zero() 66 jlog("Warning: strip: sample %d-%d has zero value, stripped\n", bgn, src-1); in strip_zero() 75 if ((src - bgn) < WINDOWLEN) { in strip_zero() 77 for(j=bgn;j<src;j++) { in strip_zero() 82 jlog("Warning: strip: sample %d-%d is invalid, stripped\n", bgn, src-1); in strip_zero()
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/dports/lang/clover/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/libosmesa/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/libosmesa-gallium/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-libs/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-gallium-xa/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-dri-gallium/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-gallium-va/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-dri-classic/mesa-20.2.3/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-gallium-vdpau/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-devel/mesa-22.0-branchpoint-2059-ge8a63cf61ec/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/graphics/mesa-dri/mesa-21.3.6/src/gallium/frontends/nine/ |
H A D | nine_helpers.c | 53 nine_range_pool_get(struct nine_range_pool *pool, int16_t bgn, int16_t end) in nine_range_pool_get() argument 60 r->bgn = bgn; in nine_range_pool_get() 70 while (r->next && r->end >= r->next->bgn) { in nine_ranges_coalesce() 79 nine_ranges_insert(struct nine_range **head, int16_t bgn, int16_t end, in nine_ranges_insert() argument 84 for (r = *head; r && bgn > r->end; pn = &r->next, r = r->next); in nine_ranges_insert() 86 if (!r || end < r->bgn) { in nine_ranges_insert() 87 *pn = nine_range_pool_get(pool, bgn, end); in nine_ranges_insert() 90 if (bgn < r->bgn) { in nine_ranges_insert() 91 r->bgn = bgn; in nine_ranges_insert()
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/dports/databases/grass7/grass-7.8.6/lib/ogsf/ |
H A D | gsdrape.c | 158 if (!((end[Y] - bgn[Y]) / (end[X] - bgn[X]) == yres / xres)) { in _gsdrape_get_segments() 249 replace = bgn; in seg_intersect_vregion() 259 (bgn[X], bgn[Y], end[X], end[Y], xl, yb, xl, yt, &xi, &yi)) { in seg_intersect_vregion() 263 (bgn[X], bgn[Y], end[X], end[Y], xr, yb, xr, yt, &xi, &yi)) { in seg_intersect_vregion() 267 (bgn[X], bgn[Y], end[X], end[Y], xl, yb, xr, yb, &xi, &yi)) { in seg_intersect_vregion() 271 (bgn[X], bgn[Y], end[X], end[Y], xl, yt, xr, yt, &xi, &yi)) { in seg_intersect_vregion() 301 (bgn[X], bgn[Y], end[X], end[Y], xl, yb, xr, yb, &xi, &yi)) { in seg_intersect_vregion() 311 (bgn[X], bgn[Y], end[X], end[Y], xl, yt, xr, yt, &xi, &yi)) { in seg_intersect_vregion() 323 if (GS_P2distance(bgn, pt1) < GS_P2distance(bgn, pt2)) { in seg_intersect_vregion() 373 if (bgn[X] == end[X] && bgn[Y] == end[Y]) { in gsdrape_get_segments() [all …]
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/webrtc/modules/audio_coding/neteq/ |
H A D | normal_unittest.cc | 48 BackgroundNoise bgn(channels); in TEST() local 53 Normal normal(fs, &db, bgn, &expand); in TEST() 61 BackgroundNoise bgn(channels); in TEST() local 65 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 67 Normal normal(fs, &db, bgn, &expand); in TEST() 96 BackgroundNoise bgn(channels); in TEST() local 100 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 102 Normal normal(fs, &db, bgn, &expand); in TEST() 121 BackgroundNoise bgn(kChannels); in TEST() local 125 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, kFs, in TEST() [all …]
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/dports/net-im/tg_owt/tg_owt-d578c76/src/modules/audio_coding/neteq/ |
H A D | normal_unittest.cc | 48 BackgroundNoise bgn(channels); in TEST() local 53 Normal normal(fs, &db, bgn, &expand, &statistics); in TEST() 61 BackgroundNoise bgn(channels); in TEST() local 65 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 67 Normal normal(fs, &db, bgn, &expand, &statistics); in TEST() 96 BackgroundNoise bgn(channels); in TEST() local 100 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 102 Normal normal(fs, &db, bgn, &expand, &statistics); in TEST() 121 BackgroundNoise bgn(kChannels); in TEST() local 125 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, kFs, in TEST() [all …]
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/webrtc/modules/audio_coding/neteq/ |
H A D | normal_unittest.cc | 48 BackgroundNoise bgn(channels); in TEST() local 53 Normal normal(fs, &db, bgn, &expand); in TEST() 61 BackgroundNoise bgn(channels); in TEST() local 65 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 67 Normal normal(fs, &db, bgn, &expand); in TEST() 96 BackgroundNoise bgn(channels); in TEST() local 100 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 102 Normal normal(fs, &db, bgn, &expand); in TEST() 121 BackgroundNoise bgn(kChannels); in TEST() local 125 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, kFs, in TEST() [all …]
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/dports/www/firefox/firefox-99.0/third_party/libwebrtc/modules/audio_coding/neteq/ |
H A D | normal_unittest.cc | 48 BackgroundNoise bgn(channels); in TEST() local 53 Normal normal(fs, &db, bgn, &expand); in TEST() 61 BackgroundNoise bgn(channels); in TEST() local 65 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 67 Normal normal(fs, &db, bgn, &expand); in TEST() 96 BackgroundNoise bgn(channels); in TEST() local 100 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, fs, in TEST() 102 Normal normal(fs, &db, bgn, &expand); in TEST() 121 BackgroundNoise bgn(kChannels); in TEST() local 125 MockExpand expand(&bgn, &sync_buffer, &random_vector, &statistics, kFs, in TEST() [all …]
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