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Searched refs:bigstack_alloc_d (Results 1 – 23 of 23) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_lasso.c252 bigstack_alloc_d(col_ct, &xhat); in lasso_bigmem()
463 if (bigstack_alloc_d(sample_valid_ct * LASSO_LAMBDA_BLOCK_SIZE, &rand_matrix) || in lasso_lambda()
464 bigstack_alloc_d(lasso_lambda_iters, &max_empirical_lambdas) || in lasso_lambda()
481 bigstack_alloc_d(sample_valid_ct, &residuals)) { in lasso_lambda()
695 if (bigstack_alloc_d(covar_ct * sample_valid_ct, &covar_data_arr)) { in lasso_smallmem()
736 if (bigstack_alloc_d(covar_ct + marker_ct, &xhat)) { in lasso_smallmem()
748 if (bigstack_alloc_d(sample_valid_ct, &data_window)) { in lasso_smallmem()
840 bigstack_alloc_d(sample_valid_ct, &data_window)) { in lasso_smallmem()
1082 bigstack_alloc_d(sample_valid_ct, &pheno_d_collapsed) || in lasso()
1083 bigstack_alloc_d(sample_valid_ct, &residuals)) { in lasso()
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H A Dplink_glm.c4540 if (bigstack_alloc_d(marker_initial_ct, &g_orig_stats) || in glm_linear_assoc()
4760 if (bigstack_alloc_d(marker_initial_ct, &orig_pvals)) { in glm_linear_assoc()
4842 if (bigstack_alloc_d(sample_valid_ct, &g_perm_pheno_d2)) { in glm_linear_assoc()
6069 if (bigstack_alloc_d(marker_initial_ct, &g_orig_stats) || in glm_logistic_assoc()
7373 bigstack_alloc_d(constraint_ct, &df_buf) || in glm_linear_nosnp()
7390 bigstack_alloc_d(param_ctx - 1, &orig_stats) || in glm_linear_nosnp()
7401 if (bigstack_alloc_d(sample_valid_ct, &g_perm_pheno_d2)) { in glm_linear_nosnp()
7547 if (bigstack_alloc_d(dgels_lwork, &dgels_work)) { in glm_linear_nosnp()
8242 bigstack_alloc_d(param_ctx - 1, &orig_stats)) { in glm_logistic_nosnp()
8355 if (bigstack_alloc_d(param_ct, &param_1d_dbuf) || in glm_logistic_nosnp()
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H A Dplink_dosage.c203 bigstack_alloc_d(score_marker_ct, score_effect_sizes_ptr) || in dosage_load_score_files()
1051 bigstack_alloc_d(sample_ct, &covar_d)) { in plink1_dosage()
1383 bigstack_alloc_d(sample_ct, &cur_dosages) || in plink1_dosage()
1449 if (bigstack_alloc_d(sample_ct, &pheno_d2) || in plink1_dosage()
1452 bigstack_alloc_d(param_ct * param_ct, &param_2d_buf) || in plink1_dosage()
1453 bigstack_alloc_d(param_ct * param_ct, &param_2d_buf2) || in plink1_dosage()
1454 bigstack_alloc_d(param_ct - 1, &regression_results) || in plink1_dosage()
1455 bigstack_alloc_d(param_ct * sample_ct, &dgels_a) || in plink1_dosage()
1456 bigstack_alloc_d(sample_ct, &dgels_b)) { in plink1_dosage()
1476 if (bigstack_alloc_d(dgels_lwork, &dgels_work)) { in plink1_dosage()
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H A Dplink_assoc.c278 if (bigstack_alloc_d(chi_ct, &sp) || in multcomp()
279 bigstack_alloc_d(chi_ct, &schi) || in multcomp()
370 if (bigstack_alloc_d(chi_ct, &pv_bh) || in multcomp()
371 bigstack_alloc_d(chi_ct, &pv_by) || in multcomp()
372 bigstack_alloc_d(chi_ct, &pv_gc)) { in multcomp()
6299 bigstack_alloc_d(marker_ct, &orig_pvals) || in model_assoc()
11130 if (bigstack_alloc_d(marker_ct, &orig_chisq)) { in cmh_assoc()
11455 if (bigstack_alloc_d(cluster_ct1, &ty_ctrl) || in cmh2_assoc()
11456 bigstack_alloc_d(cluster_ct1, &ty_case) || in cmh2_assoc()
11457 bigstack_alloc_d(cluster_ct1 - 1, &n0) || in cmh2_assoc()
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H A Dplink_rserve.c145 if (bigstack_alloc_d(pheno_nm_ct, &pheno_d2)) { in rserve_call()
164 if (bigstack_alloc_d(pheno_nm_ct * covar_ct, &covar_d2)) { in rserve_call()
H A Dplink_family.c1460 if (bigstack_alloc_d(ulii, &(pri_ptr->rel_space))) { in populate_pedigree_rel_info()
2184 if (bigstack_alloc_d(marker_ct, &orig_chisq)) { in tdt()
4219 if (bigstack_alloc_d(marker_ct, &orig_chisq)) { in dfam()
4408 bigstack_alloc_d(max_thread_ct * perm_vec_cta128, &g_dfam_numers) || in dfam()
4409 bigstack_alloc_d(max_thread_ct * perm_vec_cta128, &g_dfam_denoms)) { in dfam()
4426 if (bigstack_alloc_d(max_thread_ct * perm_vec_ctcl8m, &g_maxt_thread_results)) { in dfam()
4430 if (bigstack_alloc_d(marker_ct * g_perm_vec_ct, &g_mperm_save_all)) { in dfam()
5613 if (bigstack_alloc_d(marker_ct, &orig_beta) || in qfam()
5625 bigstack_alloc_d(marker_ct, &g_orig_stat) || in qfam()
5630 bigstack_alloc_d(lm_ct, &pheno_d2) || in qfam()
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H A Dplink_calc.c2023 if (bigstack_alloc_d(sample_ct, &g_pheno_packed)) { in regress_rel_main()
2403 if (bigstack_alloc_d(ulii, &g_rel_dists)) { in calc_unrelated_herit()
2553 if (bigstack_alloc_d(ulii, &matrix_wkbase)) { in unrelated_herit_batch()
2971 if (bigstack_alloc_d(ll_size, &ll_pool) || in groupdist_calc()
2972 bigstack_alloc_d(lh_size, &lh_pool) || in groupdist_calc()
2973 bigstack_alloc_d(hh_size, &hh_pool) || in groupdist_calc()
7077 if (bigstack_alloc_d(ulii, &rel_dists) || in calc_pca()
7146 bigstack_alloc_d(pc_ct, &cur_var_wts) || in calc_pca()
7148 bigstack_alloc_d(pc_ct, &eigval_inv_sqrts)) { in calc_pca()
7786 if (bigstack_alloc_d(45056, &subset_weights)) { in calc_distance()
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H A Dplink_cluster.c2996 if (bigstack_alloc_d(sample_ct * sample_ct, &main_matrix)) { in mds_plot()
3063 if (bigstack_alloc_d(ulii, &sqrt_eigvals) || in mds_plot()
3064 bigstack_alloc_d(ulii * ulii, &out_u) || in mds_plot()
3065 bigstack_alloc_d(ulii * ulii, &out_v)) { in mds_plot()
3081 if (bigstack_alloc_d(lwork, &work)) { in mds_plot()
3305 if (bigstack_alloc_d(sample_ct * sample_ct, &main_matrix)) { in mds_plot_eigendecomp()
3399 if (bigstack_alloc_d(dim_ct, &sqrt_eigvals)) { in mds_plot_eigendecomp()
H A Dplink_ld.c926 bigstack_alloc_d(window_max, &sums) || in ld_prune()
927 bigstack_alloc_d(window_max, &variance_recips)) { in ld_prune()
945 if (bigstack_alloc_d(window_max * window_max, &cov_matrix) || in ld_prune()
961 if (bigstack_alloc_d(ulii * window_max, &work)) { in ld_prune()
8444 if (bigstack_alloc_d(pheno_nm_ct, &pheno_d2)) { in epistasis_linear_regression()
8493 bigstack_alloc_d(idx1_block_size, &g_epi_phenogeno1); in epistasis_linear_regression()
8498 bigstack_alloc_d(ulii, &g_epi_best_chisq1); in epistasis_linear_regression()
9796 bigstack_alloc_d(ulii, &g_epi_best_chisq1); in epistasis_report()
12438 if (bigstack_alloc_d(set_ct, orig_set_scores_ptr) || in set_test_common_init()
13205 if (bigstack_alloc_d(index_ct, &sorted_pvals) || in clump_reports()
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H A Dplink_perm.c781 if (bigstack_alloc_d(perm_vec_ctcl8m * pheno_nm_ct, &g_perm_vecstd)) { in make_perm_pheno()
H A Dplink_data.c864 if (bigstack_alloc_d(unfiltered_marker_ct, set_allele_freqs_ptr)) { in load_bim()
1411 bigstack_alloc_d(ulii, covar_d_ptr)) { in load_covars()
2795 bigstack_alloc_d(marker_ct, &marker_cms) || in load_sort_and_write_map()
7570 bigstack_alloc_d(marker_ct, &marker_cms) || in transposed_to_bed()
16266 if (bigstack_alloc_d(tot_sample_ct, &pheno_d)) { in merge_datasets()
16520 bigstack_alloc_d(tot_marker_ct, &marker_cms) || in merge_datasets()
16522 bigstack_alloc_d(tot_marker_ct, &marker_cms_tmp) || in merge_datasets()
H A Dplink_common.h1114 HEADER_INLINE int32_t bigstack_alloc_d(uintptr_t ct, double** dp_ptr) { in bigstack_alloc_d() function
H A Dplink.c1755 if (bigstack_alloc_d(ulii, &mds_plot_dmatrix_copy)) { in plink()
1760 if (bigstack_alloc_d((ulii * (ulii - 1)) / 2, &mds_plot_dmatrix_copy)) { in plink()
1784 if (bigstack_alloc_d(ulii, &cluster_sorted_ibs)) { in plink()
1811 if (bigstack_alloc_d((sample_ct * (sample_ct - 1)) / 2, &g_dists)) { in plink()
H A Dplink_misc.c4572 if (bigstack_alloc_d(marker_ct, &effect_sizes_cur)) { in score_report()
4592 if (bigstack_alloc_d(sample_ct, &score_deltas) || in score_report()
H A Dplink_filter.c2914 bigstack_alloc_d(uii * marker_ct, &p_values) || in hardy_report()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_adjust.cc298 if (unlikely(bigstack_alloc_d(valid_allele_ct, &ln_pv_by))) { in Multcomp()
313 bigstack_alloc_d(valid_allele_ct, &ln_pv_bh) || in Multcomp()
314 bigstack_alloc_d(valid_allele_ct, &ln_pv_gc) || in Multcomp()
315 bigstack_alloc_d(valid_allele_ct, &unadj_sorted_ln_pvals))) { in Multcomp()
764 bigstack_alloc_d(entry_ct, &ln_pvals))) { in AdjustFile()
H A Dplink2_matrix_calc.cc410 if (unlikely(bigstack_alloc_d(king_id_ct - 1, &king_drow))) { in KingCutoffBatch()
4027 bigstack_alloc_d(max_allele_ct, &allele_1copy_buf))) { in CalcGrm()
5003 bigstack_alloc_d(pc_ct, &cur_var_wts) || in CalcPca()
5004 bigstack_alloc_d(pc_ct, &eigval_inv_sqrts))) { in CalcPca()
5035 bigstack_alloc_d(max_allele_ct, &allele_1copy_buf) || in CalcPca()
5036 bigstack_alloc_d(pc_ct, &eigvals) || in CalcPca()
5102 bigstack_alloc_d(qq_col_ct, &ss) || in CalcPca()
5103 bigstack_alloc_d(pca_row_ct * qq_col_ct, &qq) || in CalcPca()
5107 bigstack_alloc_d(gg_size, &g1))) { in CalcPca()
5902 if (unlikely(bigstack_alloc_d(variant_ct, &min_vals))) { in ScoreReport()
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H A Dplink2_glm.cc1734 bigstack_alloc_d(8 * xtx_state - 2 + in GlmAllocFillAndTestCovarsQt()
1737 bigstack_alloc_d(new_covar_ct * (new_covar_ct + 1), &corr_buf))) { in GlmAllocFillAndTestCovarsQt()
1796 bigstack_alloc_d(sample_ct, pheno_d_ptr))) { in GlmAllocFillAndTestPhenoCovarsQt()
1803 bigstack_alloc_d(1 + xtx_state + new_covar_ct, &xt_y_image))) { in GlmAllocFillAndTestPhenoCovarsQt()
1839 bigstack_alloc_d(8 * xtx_state - 3 + in GlmAllocFillAndTestPhenoCovarsCc()
1842 bigstack_alloc_d(new_covar_ct * (new_covar_ct + 1), &corr_buf))) { in GlmAllocFillAndTestPhenoCovarsCc()
9899 if (bigstack_alloc_d(sample_ct * subbatch_size, &ctx->pheno_d)) { in GlmLinearBatch()
11004 bigstack_alloc_d(raw_sample_ct, &cur_covar_vals))) { in GlmMain()
11100 if (unlikely(bigstack_alloc_d(raw_sample_ct, &sex_covar_vals))) { in GlmMain()
12475 if (unlikely(bigstack_alloc_d(cur_allele_ct, &orig_ln_pvals))) { in GlmMain()
[all …]
H A Dplink2_cmdline.h483 HEADER_INLINE BoolErr bigstack_alloc_d(uintptr_t ct, double** d_arr_ptr) { in bigstack_alloc_d() function
H A Dplink2_pvar.cc1980 if (unlikely(bigstack_alloc_d(raw_variant_ct, variant_cms_ptr))) { in LoadPvar()
H A Dplink2_misc.cc2803 if (unlikely(bigstack_alloc_d(raw_sample_ct, &shifted_pheno_qt))) { in PhenoVarianceStandardize()
4834 if (unlikely(bigstack_alloc_d(hwe_x_ct + x_xallele_ct, hwe_x_pvals_ptr))) {
H A Dplink2.cc1781 if (unlikely(bigstack_alloc_d(raw_allele_ct - raw_variant_ct, &allele_freqs))) { in Plink2Core()
1828 if (unlikely(bigstack_alloc_d(raw_variant_ct, &imp_r2_vals))) { in Plink2Core()
H A Dplink2_import.cc14397 if (unlikely(bigstack_alloc_d(variant_ct, variant_cms_ptr))) { in LoadMap()