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Searched refs:bigstack_alloc_uc (Results 1 – 17 of 17) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_compress_stream.cc82 if (unlikely(bigstack_alloc_uc(CstreamWkspaceReq(overflow_buf_size), &compress_wkspace))) { in InitCstreamAlloc()
H A Dplink2_import.cc3423 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in VcfToPgen()
8211 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in BcfToPgen()
9891 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in OxGenToPgen()
12216 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in OxBgenToPgen()
13105 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in OxBgenToPgen()
13190 bigstack_alloc_uc(cachelines_avail * kCacheline, &(compressed_geno_bufs[0])) || in OxBgenToPgen()
13191 bigstack_alloc_uc(cachelines_avail * kCacheline, &(compressed_geno_bufs[1])))) { in OxBgenToPgen()
13890 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in OxHapslegendToPgen()
15116 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in Plink1DosageToPgen()
15771 if (unlikely(bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) { in GenerateDummy()
[all …]
H A Dplink2_export.cc1754 bigstack_alloc_uc(writebuf_len, &writebuf) ||
1778 … bigstack_alloc_uc(bgen_compressed_buf_max * max_write_block_size, &(ctx.writebufs[0])) ||
1779 … bigstack_alloc_uc(bgen_compressed_buf_max * max_write_block_size, &(ctx.writebufs[1])) ||
3319 bigstack_alloc_uc(writebuf_len, &writebuf) ||
3410 … bigstack_alloc_uc(bgen_compressed_buf_max * max_write_block_size, &(ctx.writebufs[0])) ||
3411 … bigstack_alloc_uc(bgen_compressed_buf_max * max_write_block_size, &(ctx.writebufs[1])) ||
8021 bigstack_alloc_uc(1024, &haploid_genobytes4) ||
H A Dplink2_cmdline.h503 HEADER_INLINE BoolErr bigstack_alloc_uc(uintptr_t ct, unsigned char** uc_arr_ptr) { in bigstack_alloc_uc() function
H A Dplink2_data.cc4942 bigstack_alloc_uc(sample_ct4 * read_block_size, &(ctx.writebufs[0])) ||
4943 bigstack_alloc_uc(sample_ct4 * read_block_size, &(ctx.writebufs[1])))) {
5933 bigstack_alloc_uc(spgw_alloc_cacheline_ct * kCacheline, &spgw_alloc))) {
H A Dplink2_matrix_calc.cc1496 …if (unlikely(bigstack_alloc_uc(sample_ct * 4 * (2 - ((king_flags / kfKingMatrixBin4) & 1)), &numbu… in CalcKing()
5106 bigstack_alloc_uc(svd_rect_wkspace_size, &svd_rect_wkspace) || in CalcPca()
5311 bigstack_alloc_uc(wkspace_byte_ct, &extract_eigvecs_wkspace))) { in CalcPca()
H A Dplink2.cc246 bigstack_alloc_uc(cur_alloc_cacheline_ct * kCacheline, &pgfi_alloc) || in PgenInfoStandalone()
981 if (unlikely(bigstack_alloc_uc(cur_alloc_cacheline_ct * kCacheline, &pgfi_alloc))) { in Plink2Core()
1030 …if (unlikely(bigstack_alloc_uc((pgr_alloc_cacheline_ct + DivUp(max_vrec_width, kCacheline)) * kCac… in Plink2Core()
H A Dplink2_cmdline.cc294 if (unlikely(bigstack_alloc_uc(str_ct * wkspace_entry_blen, &sort_wkspace))) { in SortStrboxIndexed()
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dbgen_to_gen.c114 if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + sample_ct * 48LU, &overflow_buf)) { in bgen_to_gen()
H A Dplink_calc.c2081 …if (bigstack_alloc_uc(g_thread_ct * round_up_pow2(sample_ct * (g_jackknife_d + 1) * sizeof(int32_t… in regress_rel_main()
2974 …bigstack_alloc_uc(g_thread_ct * round_up_pow2(g_case_ct + g_ctrl_ct + (g_jackknife_d + 1) * sizeof… in groupdist_calc()
4633 bigstack_alloc_uc(GENOME_MULTIPLEX * unfiltered_sample_ct4, &loadbuf) || in calc_genome()
4639 bigstack_alloc_uc(262144, &overflow_buf)) { in calc_genome()
5493 bigstack_alloc_uc(262144, &overflow_buf)) { in rel_cutoff_batch()
6488 bigstack_alloc_uc(MULTIPLEX_REL * unfiltered_sample_ct4, &gptr) || in calc_rel()
6491 bigstack_alloc_uc(262144, &overflow_buf)) { in calc_rel()
7494 bigstack_alloc_uc(MULTIPLEX_DIST * unfiltered_sample_ct4, &bedbuf)) { in calc_ibm()
7781 if (bigstack_alloc_uc(multiplex * unfiltered_sample_ct4, &bedbuf)) { in calc_distance()
9446 …if (bigstack_alloc_uc(thread_ct * round_up_pow2(sample_ct + (g_jackknife_d + 1) * sizeof(int32_t),… in regress_distance()
H A Dplink_misc.c2418 if (bigstack_alloc_uc(uii + PIGZ_BLOCK_SIZE, &overflow_buf) || in write_stratified_freqs()
2696 …if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + 2 * max_marker_allele_len + max_marker_id_len + 256, &over… in write_cc_freqs()
2872 if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + 2 * max_marker_allele_len + MAXLINELEN, &overflow_buf)) { in write_freqs()
3759 if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + MAXLINELEN, &overflow_buf) || in het_report()
H A Dplink_filter.c2548 if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + MAXLINELEN, &overflow_buf) || in write_missingness_reports()
2913 if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + 2 * max_marker_allele_len + MAXLINELEN, &overflow_buf) || in hardy_report()
H A Dplink_data.c6528 if (bigstack_alloc_uc(((uintptr_t)marker_ct) * sample_ct4, &writebuf)) { in lgen_to_bed()
7161 if (bigstack_alloc_uc(sample_ct4, &writebuf) || in transposed_to_bed()
7162 bigstack_alloc_uc(sample_ct, &prewritebuf)) { in transposed_to_bed()
10341 if (bigstack_alloc_uc(sample_ct4, &writebuf)) { in generate_dummy()
12143 …if (bigstack_alloc_uc(PIGZ_BLOCK_SIZE + sample_ct * 6 + 2 * max_marker_allele_len + MAXLINELEN, &o… in recode()
16602 if (bigstack_alloc_uc(MAXV(ulii, 3), &readbuf)) { in merge_datasets()
H A Dplink_dosage.c1376 if (bigstack_alloc_uc(2 * PIGZ_BLOCK_SIZE, &overflow_buf) || in plink1_dosage()
H A Dplink_common.h1129 HEADER_INLINE int32_t bigstack_alloc_uc(uintptr_t ct, unsigned char** ucp_ptr) { in bigstack_alloc_uc() function
H A Dplink_family.c819 bigstack_alloc_uc(trio_ct, &cur_errors)) { in mendel_error_scan()
6174 if (bigstack_alloc_uc(trio_ct2 * marker_ct + BYTECT, &new_bed_contents)) { in make_pseudocontrols()
H A Dplink_ld.c2234 if (bigstack_alloc_uc(262144, &overflow_buf)) { in ld_report_matrix()
5306 if (bigstack_alloc_uc(262144, &overflow_buf) || in ld_report_dprime()
5751 if (bigstack_alloc_uc(262144, &overflow_buf)) { in ld_report_regular()