Searched refs:bin_cursor (Results 1 – 14 of 14) sorted by relevance
1472 if(bin_cursor %2 == 0) read_bin[bin_cursor/2] = fourbit<<4; in SamBam_read2bin()1475 bin_cursor++; in SamBam_read2bin()1482 int bin_cursor = 0; in SamBam_compress_additional() local1505 bin_cursor += 3 + 4; in SamBam_compress_additional()1511 bin_cursor +=3; in SamBam_compress_additional()1528 bin[bin_cursor+2]='A'; in SamBam_compress_additional()1531 bin_cursor += 4; in SamBam_compress_additional()1541 bin_cursor += 4 + 4; in SamBam_compress_additional()1561 bin_cursor += 4; in SamBam_compress_additional()1582 return bin_cursor; in SamBam_compress_additional()[all …]
3446 int bin_cursor = 0; in SAM_pairer_iterate_tags() local3447 while(bin_cursor < bin_len){ in SAM_pairer_iterate_tags()3450 outc[0] = bin[bin_cursor]; in SAM_pairer_iterate_tags()3451 outc[1] = bin[bin_cursor+1]; in SAM_pairer_iterate_tags()3454 …SUBREADprintf("TAG=%s, TYP=%c %d %c\n", outc, bin[bin_cursor+2], bin[bin_cursor+3], bin[bin_curs… in SAM_pairer_iterate_tags()3457 if(bin[bin_cursor] == tag_name[0] && bin[bin_cursor+1] == tag_name[1]){ in SAM_pairer_iterate_tags()3465 bin_cursor += skip_content ; in SAM_pairer_iterate_tags()3585 bin_cursor += write_text_len; in SAM_pairer_multi_thread_header()4511 int bin_cursor = 0; in is_read_bin() local4514 int rr = is_read_bin_ONE(bin + bin_cursor, bin_len - bin_cursor, max_refID, &block_len); in is_read_bin()[all …]
341 struct __attribute__ ((__packed__)) bin_cursor struct
1403 struct bin_cursor bc; in res_to_bin_cursor()
1412 struct bin_cursor bc; in res_to_bin_cursor()
1409 struct bin_cursor bc; in res_to_bin_cursor()