Searched refs:bioPolymerCount (Results 1 – 4 of 4) sorted by relevance
74 int bioPolymerCount = 0; field in BioModel95 if (bioPolymerCount == bioPolymers.length) in addBioPolymer()98 bioPolymers[bioPolymerCount++] = polymer; in addBioPolymer()108 for (int i = bioPolymerCount; --i >= 0;) in addSecondaryStructure()116 for (int i = bioPolymerCount; --i >= 0;) { in addStructureByBS()150 for (int i = bioPolymerCount; --i >= 0;) in calculateStructures()154 for (int i = bioPolymerCount; --i >= 0;) in calculateStructures()163 bioPolymerCount = 0; in clearBioPolymers()182 for (int j = 0; j < bioPolymerCount; j++) { in getBioBranches()196 return bioPolymerCount; in getBioPolymerCount()[all …]
113 for (int j = m.bioPolymerCount; --j >= 0;) in calcSelectedMonomersCount()242 for (int ip = 0; ip < m.bioPolymerCount; ip++) in getAllPolymerPointsAndVectors()259 for (int ip = 0; ip < m.bioPolymerCount; ip++) { in getAllSequenceBits()496 for (int i = m.bioPolymerCount; --i >= 0;) in getGroupsWithinAll()577 for (int j = m.bioPolymerCount; --j >= 0;) in setAllConformation()632 m.bioPolymerCount); in setAllStructureList()633 for (int i = m.bioPolymerCount; --i >= 0;) { in setAllStructureList()
55 for (int ip = 0; ip < m.bioPolymerCount; ip++) { in getAllPolymerInfo()118 for (int p = 0; p < m.bioPolymerCount; p++) in calculateStraightnessAll()656 for (int p = 0; p < m.bioPolymerCount; p++) in getPdbDataM()
207 private int bioPolymerCount; field in DSSP228 public String calculateDssp(Object[] objBioPolymers, int bioPolymerCount, in calculateDssp() argument232 this.bioPolymerCount = bioPolymerCount; in calculateDssp()239 for (int i = 0; i < bioPolymerCount; i++) in calculateDssp()267 labels = new char[bioPolymerCount][]; in calculateDssp()268 done = new BS[bioPolymerCount]; in calculateDssp()327 String[] reports = new String[bioPolymerCount]; in calculateDssp()382 int[][][][] min = AU.newInt4(bioPolymerCount); in getDualHydrogenBondArray()383 for (int i = 0; i < bioPolymerCount; i++) { in getDualHydrogenBondArray()394 for (int i = 0; i < bioPolymerCount; i++) in getDualHydrogenBondArray()[all …]