/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | plink_dosage.c | 944 bitvec_and(sex_nm, unfiltered_sample_ctl, pheno_nm); in plink1_dosage() 1072 bitvec_and(pheno_nm, unfiltered_sample_ctl, pheno_c); in plink1_dosage() 1079 bitvec_and(sex_nm, unfiltered_sample_ctl, sex_male); in plink1_dosage() 1921 bitvec_and(covar_nm, sample_ctl, cur_samples); in plink1_dosage()
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H A D | plink_misc.c | 2719 bitvec_and(ulptr, unfiltered_sample_ctl2, case_include2); in write_cc_freqs() 2720 bitvec_and(ulptr, unfiltered_sample_ctl2, ctrl_include2); in write_cc_freqs() 2721 bitvec_and(ulptr, unfiltered_sample_ctl2, male_vec); in write_cc_freqs() 2722 bitvec_and(ulptr, unfiltered_sample_ctl2, nonmale_vec); in write_cc_freqs() 3266 bitvec_and(sex_nm, unfiltered_sample_ctl, sex_male); in sexcheck() 3827 bitvec_and(founder_vec11, sample_ctl2, loadbuf_f); in het_report()
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H A D | plink.c | 1074 bitvec_and(sex_nm, unfiltered_sample_ctl, pheno_nm); in plink() 1261 bitvec_and(pheno_nm, unfiltered_sample_ctl, pheno_c); in plink() 1268 bitvec_and(sex_nm, unfiltered_sample_ctl, sex_male); in plink() 1401 bitvec_and(sex_nm, unfiltered_sample_ctl, sex_male); in plink() 1406 bitvec_and(pheno_nm, unfiltered_sample_ctl, pheno_c); in plink() 1497 bitvec_and(sex_nm, unfiltered_sample_ctl, sex_male); in plink() 1502 bitvec_and(pheno_nm, unfiltered_sample_ctl, pheno_c); in plink() 1612 bitvec_and(sex_nm, unfiltered_sample_ctl, pheno_nm_datagen); in plink() 2004 bitvec_and(sex_nm, unfiltered_sample_ctl, pheno_nm); in plink() 2019 bitvec_and(pheno_nm, unfiltered_sample_ctl, pheno_c); in plink()
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H A D | plink_glm.c | 3706 bitvec_and(sex_nm, unfiltered_sample_ctl, load_mask); in glm_common_init() 4160 bitvec_and(unstopped_markers, marker_ctl, regression_skip); in glm_linear_assoc_set_test() 4512 bitvec_and(founder_info, unfiltered_sample_ctl, founder_pnm); in glm_linear_assoc() 5711 bitvec_and(unstopped_markers, marker_ctl, regression_skip); in glm_logistic_assoc_set_test() 6039 bitvec_and(founder_info, unfiltered_sample_ctl, founder_pnm); in glm_logistic_assoc() 7209 bitvec_and(sex_nm, unfiltered_sample_ctl, load_mask); in glm_linear_nosnp() 8070 bitvec_and(sex_nm, unfiltered_sample_ctl, load_mask); in glm_logistic_nosnp()
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H A D | plink_family.c | 2706 bitvec_and(founder_info, unfiltered_sample_ctl, tmp_within2_founder); in get_sibship_info() 2719 bitvec_and(pheno_nm, unfiltered_sample_ctl, ulptr); in get_sibship_info() 2824 bitvec_and(ulptr, unfiltered_sample_ctl, *size_one_sibships_ptr); in get_sibship_info() 3971 bitvec_and(founder_info, unfiltered_sample_ctl, founder_pnm); in dfam()
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H A D | plink_set.c | 1205 bitvec_and(marker_bitfield_tmp, unfiltered_marker_ctl, marker_exclude_new); in define_sets() 1273 bitvec_and(marker_bitfield_tmp, unfiltered_marker_ctl, marker_exclude_new); in define_sets()
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H A D | plink_ld.c | 1567 bitvec_and(pheno_nm, unfiltered_sample_ctl, founder_phenos[0]); in flipscan() 1572 bitvec_and(pheno_c, unfiltered_sample_ctl, founder_phenos[1]); in flipscan() 5158 bitvec_and(sex_male, founder_ctv3, cur_geno1_male); in ld_dprime_thread() 5160 bitvec_and(sex_male, founder_ctv3, &(cur_geno1_male[founder_ctv3])); in ld_dprime_thread() 5162 bitvec_and(sex_male, founder_ctv3, &(cur_geno1_male[2 * founder_ctv3])); in ld_dprime_thread() 7211 bitvec_and(pheno_nm, unfiltered_sample_ctl, founder_pnm); in haploview_blocks() 10599 bitvec_and(sex_male_collapsed, founder_ctv3, cur_geno1_male); in indep_pairphase() 10601 bitvec_and(sex_male_collapsed, founder_ctv3, &(cur_geno1_male[founder_ctv3])); in indep_pairphase() 10603 bitvec_and(sex_male_collapsed, founder_ctv3, &(cur_geno1_male[2 * founder_ctv3])); in indep_pairphase()
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H A D | plink_assoc.c | 6164 bitvec_and(founder_info, unfiltered_sample_ctl, founder_pnm); in model_assoc() 6474 bitvec_and(sample_case_include2, pheno_nm_ctv2, sample_male_case_include2); in model_assoc() 7896 bitvec_and(unstopped_markers, marker_ctl, regression_skip); in qassoc_set_test() 8202 bitvec_and(founder_info, unfiltered_sample_ctl, founder_pnm); in qassoc() 10110 bitvec_and(sex_male, unfiltered_sample_ctl, pheno_male_nm2); in testmiss() 10473 bitvec_and(sex_male_collapsed, pheno_nm_ctl, loadbuf_ptr); in testmiss()
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H A D | plink_common.h | 2451 void bitvec_and(const uintptr_t* __restrict arg_bitvec, uintptr_t word_ct, uintptr_t* __restrict ma…
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H A D | plink_common.c | 5768 void bitvec_and(const uintptr_t* __restrict arg_bitvec, uintptr_t word_ct, uintptr_t* __restrict ma… in bitvec_and() function
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