| /dports/biology/fasta/fasta/ |
| H A D | pam.c | 19 extern int bestoff, bestscale, bkfact, scfact, bktup, bestmax, histint;
34 bkfact = 5;
70 &scfact,&bestoff,&bestscale,&bkfact,&bktup,&bestmax,&histint)!=7) {
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| H A D | pscore.c | 23 int bkfact=5; variable
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| H A D | relate.c | 47 int bkfact=5; variable
227 bkfact=5;
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| H A D | bestscor.c | 26 int bkfact=5; variable
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| H A D | prss.c | 75 int bkfact=5; variable
425 bkfact=5;
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| H A D | align.c | 63 int bktup, bkfact, scfact, bestoff, bestscale, histint, bestmax; variable
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| H A D | prdf.c | 117 int bkfact=6; variable
504 bkfact=5;
526 btemp = 2*bestoff/3 + n0/bestscale + bkfact*(bktup-ktup); in initparm()
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| H A D | score_al.c | 58 int bktup, bkfact, scfact, bestoff, bestscale, histint, bestmax; variable
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| H A D | lalign2.c | 76 int bktup, bkfact, scfact, bestoff, bestscale, histint, bestmax; variable
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| H A D | fffasta.c | 315 int bkfact=6; variable
1245 bkfact=5;
1274 btemp = 2*bestoff/3 + n0/bestscale + bkfact*(bktup-ktup); in initparm()
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| H A D | ssearch.c | 168 int bestmax, bestscale, bestoff, bkfact, scfact, bktup; variable
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | param.h | 23 int bkfact; member
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| H A D | dropnfa.c | 169 ppst->param_u.fa.bkfact * in init_work()
178 if (ppst->param_u.fa.ktup < 3) btemp -= ppst->param_u.fa.bkfact; in init_work()
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| H A D | initfa.c | 961 ppst->param_u.fa.bkfact = 6; in f_initenv()
1630 ppst->param_u.fa.bkfact = 5; in resetp()
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| H A D | dropfx2.c | 246 ppst->param_u.fa.bkfact * in init_work()
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| H A D | dropfz3.c | 431 ppst->param_u.fa.bkfact * in init_work()
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| H A D | dropfx.c | 244 ppst->param_u.fa.bkfact * in init_work()
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| H A D | dropfz2.c | 431 ppst->param_u.fa.bkfact * in init_work()
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