Searched refs:black_subread_end (Results 1 – 1 of 1) sorted by relevance
1005 int black_subread_end = max_indel_recorder[i]-1; in explain_indel_in_middle() local1006 if (black_subread_end < black_subread_start+1) black_subread_end = black_subread_start+1; in explain_indel_in_middle()1009 if (max_indel_recorder[i+3]- black_subread_end>2 || i >= max_indel*3-3) break; in explain_indel_in_middle()1010 black_subread_end = max_indel_recorder[i+3]-1; in explain_indel_in_middle()1014 …int black_base_end = find_subread_end(read_len, total_subreads, black_subread_end)-15 + 3 + max(0,… in explain_indel_in_middle()