Searched refs:bwd_prob (Results 1 – 4 of 4) sorted by relevance
/dports/biology/bcftools/bcftools-1.14/ |
H A D | HMM.c | 40 double *bwd_prob; // transition probabilities member 101 if ( !hmm->init.bwd_prob ) in hmm_init_states() 102 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 108 if ( !hmm->state.bwd_prob ) in hmm_init_states() 109 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 123 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 126 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 309 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd() 392 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch() 494 free(hmm->init.bwd_prob); in hmm_destroy() [all …]
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/dports/biology/bio-mocha/bcftools-1.14/ |
H A D | HMM.c | 40 double *bwd_prob; // transition probabilities member 101 if ( !hmm->init.bwd_prob ) in hmm_init_states() 102 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 108 if ( !hmm->state.bwd_prob ) in hmm_init_states() 109 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 123 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 126 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 309 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd() 392 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch() 494 free(hmm->init.bwd_prob); in hmm_destroy() [all …]
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/dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
H A D | HMM.c | 40 double *bwd_prob; // transition probabilities member 101 if ( !hmm->init.bwd_prob ) in hmm_init_states() 102 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 108 if ( !hmm->state.bwd_prob ) in hmm_init_states() 109 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 123 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 126 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 309 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd() 392 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch() 494 free(hmm->init.bwd_prob); in hmm_destroy() [all …]
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H A D | HMM.c.pysam.c | 42 double *bwd_prob; // transition probabilities member 103 if ( !hmm->init.bwd_prob ) in hmm_init_states() 104 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 110 if ( !hmm->state.bwd_prob ) in hmm_init_states() 111 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states() 125 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 128 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states() 311 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd() 394 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch() 496 free(hmm->init.bwd_prob); in hmm_destroy() [all …]
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