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Searched refs:bwd_prob (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bcftools/bcftools-1.14/
H A DHMM.c40 double *bwd_prob; // transition probabilities member
101 if ( !hmm->init.bwd_prob ) in hmm_init_states()
102 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
108 if ( !hmm->state.bwd_prob ) in hmm_init_states()
109 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
123 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
126 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
309 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd()
392 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch()
494 free(hmm->init.bwd_prob); in hmm_destroy()
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/dports/biology/bio-mocha/bcftools-1.14/
H A DHMM.c40 double *bwd_prob; // transition probabilities member
101 if ( !hmm->init.bwd_prob ) in hmm_init_states()
102 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
108 if ( !hmm->state.bwd_prob ) in hmm_init_states()
109 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
123 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
126 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
309 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd()
392 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch()
494 free(hmm->init.bwd_prob); in hmm_destroy()
[all …]
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A DHMM.c40 double *bwd_prob; // transition probabilities member
101 if ( !hmm->init.bwd_prob ) in hmm_init_states()
102 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
108 if ( !hmm->state.bwd_prob ) in hmm_init_states()
109 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
123 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
126 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
309 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd()
392 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch()
494 free(hmm->init.bwd_prob); in hmm_destroy()
[all …]
H A DHMM.c.pysam.c42 double *bwd_prob; // transition probabilities member
103 if ( !hmm->init.bwd_prob ) in hmm_init_states()
104 hmm->init.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
110 if ( !hmm->state.bwd_prob ) in hmm_init_states()
111 hmm->state.bwd_prob = (double*) malloc(sizeof(double)*hmm->nstates); in hmm_init_states()
125 memcpy(hmm->init.bwd_prob,hmm->init.vit_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
128 memcpy(hmm->state.bwd_prob,hmm->init.bwd_prob,sizeof(double)*hmm->nstates); in hmm_init_states()
311 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_fwd_bwd()
394 memcpy(hmm->bwd, hmm->state.bwd_prob, sizeof(*hmm->state.bwd_prob)*nstates); in hmm_run_baum_welch()
496 free(hmm->init.bwd_prob); in hmm_destroy()
[all …]