Searched refs:c_lnL_sorted (Results 1 – 9 of 9) sorted by relevance
288 …phydbl *c_lnL_sorted; /* used to compute c_lnL by adding sorted terms to m… member
449 … for(site=0;site<tree->n_pattern;site++) tree->log_lks_aLRT[0][site] = tree->c_lnL_sorted[site]; in NNI_Neigh_BL()548 for(site=0;site<tree->n_pattern;site++) tree->log_lks_aLRT[1][site]= tree->c_lnL_sorted[site]; in NNI_Neigh_BL()666 for(site=0;site<tree->n_pattern;site++) tree->log_lks_aLRT[2][site]= tree->c_lnL_sorted[site]; in NNI_Neigh_BL()
830 tree->c_lnL_sorted[csite]); in Ancestral_Sequences_One_Node()869 for(i=0;i<ns;i++) p[i] -= tree->c_lnL_sorted[csite]; in Ancestral_Sequences_One_Node()
411 Free(tree->c_lnL_sorted); in Free_Tree_Lk()
1053 mixt_tree->c_lnL_sorted[site] = mixt_tree->data->wght[site]*log_site_lk; in MIXT_Lk()2533 tree->c_lnL_sorted = (phydbl *)mCalloc(tree->n_pattern,sizeof(phydbl)); in MIXT_Make_Tree_For_Lk()
848 tree->c_lnL_sorted[site] = log_site_lk; in Lk_Core()938 tree->c_lnL_sorted[site] = log_site_lk; in Lk_Core_Eigen_Lr()
792 …phydbl *c_lnL_sorted; /*! used to compute c_lnL by adding sorted terms to m… member
26 tree->c_lnL_sorted = (phydbl *)mCalloc(tree->n_pattern,sizeof(phydbl)); in Make_Tree_For_Lk()
1321 t_empt->c_lnL_sorted = t_full->c_lnL_sorted; in Share_Lk_Struct()