Searched refs:cds_feats (Results 1 – 11 of 11) sorted by relevance
| /dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/ |
| H A D | MCS.t | 39 my @cds_feats;
50 push(@cds_feats, $cds_feat);
55 my @feats = $factory->run($align, $location, \@cds_feats);
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
| H A D | field_handler.cpp | 252 list<CMappedFeat> cds_feats; in GetRelatedFeatures() local
253 feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats); in GetRelatedFeatures()
254 for (auto& cds_it : cds_feats) { in GetRelatedFeatures()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | field_handler.cpp | 252 list<CMappedFeat> cds_feats; in GetRelatedFeatures() local
253 feature::GetCdssForGene(scope->GetSeq_featHandle(obj_feat), cds_feats); in GetRelatedFeatures()
254 for (auto& cds_it : cds_feats) { in GetRelatedFeatures()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/util/ |
| H A D | sequence.hpp | 472 list< CConstRef<CSeq_feat> >& cds_feats,
516 list< CConstRef<CSeq_feat> >& cds_feats,
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| H A D | feature.hpp | 475 list< CMappedFeat >& cds_feats,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/util/ |
| H A D | sequence.hpp | 472 list< CConstRef<CSeq_feat> >& cds_feats,
516 list< CConstRef<CSeq_feat> >& cds_feats,
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| H A D | feature.hpp | 475 list< CMappedFeat >& cds_feats,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | sequence.cpp | 2208 list< CConstRef<CSeq_feat> >& cds_feats, in GetCdssForGene()
2219 cds_feats.push_back(cds); in GetCdssForGene()
2229 cds_feats.push_back(feat); in GetCdssForGene()
2429 list< CConstRef<CSeq_feat> >& cds_feats, in GetCdssForGene()
2434 GetCdssForGene(gene_feat, tse.GetScope(), cds_feats, opts); in GetCdssForGene()
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| H A D | feature.cpp | 3410 list< CMappedFeat >& cds_feats, in GetCdssForGene()
3422 GetCdssForGene(gene_feat, cds_feats, &tree); in GetCdssForGene()
3431 cds_feats.push_back(*it2); in GetCdssForGene()
3436 cds_feats.push_back(*it); in GetCdssForGene()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | sequence.cpp | 2208 list< CConstRef<CSeq_feat> >& cds_feats, in GetCdssForGene()
2219 cds_feats.push_back(cds); in GetCdssForGene()
2229 cds_feats.push_back(feat); in GetCdssForGene()
2429 list< CConstRef<CSeq_feat> >& cds_feats, in GetCdssForGene()
2434 GetCdssForGene(gene_feat, tse.GetScope(), cds_feats, opts); in GetCdssForGene()
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| H A D | feature.cpp | 3410 list< CMappedFeat >& cds_feats, in GetCdssForGene()
3422 GetCdssForGene(gene_feat, cds_feats, &tree); in GetCdssForGene()
3431 cds_feats.push_back(*it2); in GetCdssForGene()
3436 cds_feats.push_back(*it); in GetCdssForGene()
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